BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0258200 Os02g0258200|AK070270
         (269 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0258200  High mobility group box domain containing protein   265   2e-71

>Os02g0258200 High mobility group box domain containing protein
          Length = 269

 Score =  265 bits (678), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 153/263 (58%), Positives = 153/263 (58%)

Query: 1   EEQMQRTAKELLEQYLKFRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPMSAYFVY 60
           EEQMQRTAKELLEQYLKFRQ                               QPMSAYFVY
Sbjct: 1   EEQMQRTAKELLEQYLKFRQEADDDGDGGDNKKASKKGKKKKKEKDPSKPKQPMSAYFVY 60

Query: 61  TQQRRAALVAEKKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEYQVEMAAYRXXXX 120
           TQQRRAALVAEKKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEYQVEMAAYR    
Sbjct: 61  TQQRRAALVAEKKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEYQVEMAAYRQRKQ 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
                                                                       
Sbjct: 121 EEAACQEKEEEEQKKIMKQEALQLLKKKEKTDNIIKKTKEEQRKKKVGGAAAAADPNRPK 180

Query: 181 XXXSSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAMAAYK 240
              SSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAMAAYK
Sbjct: 181 KPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAMAAYK 240

Query: 241 RDMEEYTKXXXXXXXXXXXXPCT 263
           RDMEEYTK            PCT
Sbjct: 241 RDMEEYTKAAASGGGGGDASPCT 263



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.122    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,223,440
Number of extensions: 107161
Number of successful extensions: 407
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)