BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0258200 Os02g0258200|AK070270
(269 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23800.1 | chr4:12390228-12392516 FORWARD LENGTH=457 88 6e-18
AT4G11080.1 | chr4:6760898-6763272 REVERSE LENGTH=447 86 2e-17
AT1G20696.2 | chr1:7179825-7181193 FORWARD LENGTH=148 54 1e-07
AT3G51880.2 | chr3:19247241-19248491 REVERSE LENGTH=186 53 1e-07
AT1G20693.1 | chr1:7177282-7178487 FORWARD LENGTH=145 52 4e-07
AT4G35570.1 | chr4:16887363-16888184 REVERSE LENGTH=126 50 2e-06
>AT4G23800.1 | chr4:12390228-12392516 FORWARD LENGTH=457
Length = 456
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 53/65 (81%)
Query: 184 SSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAMAAYKRDM 243
SS+ LFSK+ R++L EERPG ++T+TAL+S+KWKEL E EKQ +NGKAA+ M AYK+++
Sbjct: 384 SSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKLMEAYKKEV 443
Query: 244 EEYTK 248
E Y K
Sbjct: 444 EAYNK 448
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 1 EEQMQRTAKELLEQYLKFRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPMSAYFVY 60
++Q QRTA ELL+QYL F Q P+SA+ VY
Sbjct: 217 DDQKQRTAMELLDQYLNFVQEAEQDNKKKNKKEKDPLKPK-----------HPVSAFLVY 265
Query: 61 TQQRRAALVAEKKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEYQVEMAAYR 116
+RRAAL E K+V E+ +ITGEEWK +S+ +KAP+E A+K +E Y M Y+
Sbjct: 266 ANERRAALREENKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYK 321
>AT4G11080.1 | chr4:6760898-6763272 REVERSE LENGTH=447
Length = 446
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 51/65 (78%)
Query: 184 SSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAMAAYKRDM 243
SS+ LF K+AR+ + EE PG+ +ST+TA +S+KW ELGE EKQ +N KAAE M AYK+++
Sbjct: 377 SSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAELMEAYKKEV 436
Query: 244 EEYTK 248
EEY K
Sbjct: 437 EEYNK 441
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 11/116 (9%)
Query: 1 EEQMQRTAKELLEQYLKFRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPMSAYFVY 60
+EQ Q+TA ELL+QYL F Q QP+SAY +Y
Sbjct: 208 DEQKQKTAMELLDQYLHFVQEAEHDNKKKAKKIKDPLKPK-----------QPISAYLIY 256
Query: 61 TQQRRAALVAEKKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEYQVEMAAYR 116
+RRAAL E K+V E+ ++ GEEWK +SE +KAP++ A+K +E Y EM Y+
Sbjct: 257 ANERRAALKGENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEGYK 312
>AT1G20696.2 | chr1:7179825-7181193 FORWARD LENGTH=148
Length = 147
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 52 QPMSAYFVYTQQRRAALVAE---KKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEY 108
+P SA+FV+ + R E K+V +G+ GE+WK++S++EKAP+ A A K++ EY
Sbjct: 37 RPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEY 96
Query: 109 QVEMAAY 115
+ M AY
Sbjct: 97 EKNMKAY 103
>AT3G51880.2 | chr3:19247241-19248491 REVERSE LENGTH=186
Length = 185
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 55 SAYFVYTQQRRAALVAEKKNV---PEIGRITGEEWKAMSEAEKAPFEAAARKQREEYQVE 111
SA+FV+ + R E NV +G+ G++WK+MS+AEKAP+E A K++ EY+ +
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQ 117
Query: 112 MAAY 115
M AY
Sbjct: 118 MDAY 121
>AT1G20693.1 | chr1:7177282-7178487 FORWARD LENGTH=145
Length = 144
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 52 QPMSAYFVYTQQRRAALVAEK---KNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEY 108
+P SA+FV+ + R E K+V +G+ G++WK++S++EKAP+ A A K++ EY
Sbjct: 40 RPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEY 99
Query: 109 QVEMAAYR 116
+ + AY
Sbjct: 100 EKNIKAYN 107
>AT4G35570.1 | chr4:16887363-16888184 REVERSE LENGTH=126
Length = 125
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 52 QPMSAYFVYTQQRRAALV---AEKKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEY 108
+P S +FV+ R + K+V +GR G++WK M+E E+APF A ++ ++ EY
Sbjct: 36 KPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEY 95
Query: 109 QVEMAAYR 116
V M Y
Sbjct: 96 AVTMQQYN 103
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.122 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,684,181
Number of extensions: 66399
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 8
Length of query: 269
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 172
Effective length of database: 8,447,217
Effective search space: 1452921324
Effective search space used: 1452921324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)