Os02g0214300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nuclear ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3 endonuclease) (Zinc phosphodiesterase ELAC) (Fragment).
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Os02g0214300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nuclear ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3 endonuclease) (Zinc phosphodiesterase ELAC) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.43 | 0.648 | 4.09 | -0.209 | 0.148 | -1.5 | 0.335 | -5.09 | -0.492 | 2.89 | 20 | 6286 | -- | -- |
| 219.65 | 0.696 | 4.28 | -0.584 | 0.204 | -0.172 | 0.359 | -- | -0.558 | 2.21 | 20 | 6286 | -- | -- |
| 188.94 | 0.64 | 4.07 | -0.293 | 0.11 | -1.75 | -- | -5.59 | -0.481 | 0.855 | 19.7 | 6998 | -- | -- |
| 215.52 | 0.684 | 4.27 | -0.553 | 0.181 | -0.321 | -- | -- | -0.484 | 3.16 | 32 | 4389 | -- | -- |
| 189.29 | 0.641 | 4.05 | -0.324 | -- | -1.95 | -- | -6.02 | -0.507 | -- | 19.6 | 7084 | -- | -- |
| 220.85 | 0.697 | 4.28 | -0.539 | 0.164 | -- | 0.339 | -- | -0.526 | 2.3 | -- | -- | -- | -- |
| 221.25 | 0.697 | 4.28 | -0.549 | 0.168 | -- | -- | -- | -0.528 | 2.77 | -- | -- | -- | -- |
| 215.79 | 0.684 | 4.26 | -0.652 | -- | -0.474 | -- | -- | -0.448 | -- | 32.07 | 4367 | -- | -- |
| 225.5 | 0.699 | 4.25 | -- | 0.133 | -0.336 | -- | -- | -0.404 | 2.94 | 32.1 | 4375 | -- | -- |
| 222.88 | 0.698 | 4.28 | -0.542 | -- | -- | -- | -- | -0.524 | -- | -- | -- | -- | -- |
| 229.2 | 0.708 | 4.26 | -- | 0.157 | -- | -- | -- | -0.467 | 2.74 | -- | -- | -- | -- |
| 226.52 | 0.701 | 4.25 | -- | -- | -0.354 | -- | -- | -0.398 | -- | 32.02 | 4375 | -- | -- |
| 230.63 | 0.709 | 4.26 | -- | -- | -- | -- | -- | -0.464 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.77 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 26 | 188.11 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 51 | 189.81 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 62 | 190.34 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 71 | 190.73 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 75 | 191.00 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 15 |
| 78 | 191.03 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 90 | 191.40 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 93 | 191.43 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 103 | 191.50 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 105 | 191.53 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 114 | 191.57 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 118 | 191.63 | temperature | 20.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 138 | 191.80 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 141 | 191.82 | temperature | 20.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 144 | 191.83 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 152 | 191.87 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 170 | 191.95 | temperature | 20.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 188 | 192.02 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 238 | 192.20 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 367 | 192.74 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 417 | 192.98 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 448 | 193.12 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 624 | 193.76 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 706 | 194.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 748 | 194.10 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 17 |
| 760 | 194.12 | temperature | 30.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 872 | 194.33 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 891 | 194.37 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 892 | 194.37 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 898 | 194.38 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 21 |
| 919 | 194.45 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 948 | 194.51 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 959 | 194.54 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 21 |
| 969 | 194.55 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 987 | 194.58 | temperature | 20.0 | 4320 | < th | dose independent | no | NA | NA |