Os02g0193800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os02g0193800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.73 | 0.318 | 9.72 | 0.228 | 0.635 | -1 | -0.648 | -0.1 | 0.174 | 5.12 | 22.34 | 714 | -- | -- |
| 45.75 | 0.315 | 9.72 | 0.218 | 0.635 | -0.981 | -0.654 | -- | 0.172 | 5.12 | 22.37 | 713 | -- | -- |
| 46.79 | 0.319 | 9.72 | 0.232 | 0.634 | -1 | -- | -0.113 | 0.178 | 5.14 | 22.31 | 723 | -- | -- |
| 46.8 | 0.319 | 9.72 | 0.214 | 0.628 | -0.994 | -- | -- | 0.173 | 5.22 | 22.33 | 734 | -- | -- |
| 65.14 | 0.376 | 9.72 | 0.198 | -- | -1.2 | -- | -0.27 | 0.18 | -- | 21.98 | 1125 | -- | -- |
| 56.61 | 0.353 | 9.69 | 0.462 | 0.618 | -- | -0.712 | -- | 0.31 | 4.54 | -- | -- | -- | -- |
| 57.96 | 0.357 | 9.69 | 0.467 | 0.615 | -- | -- | -- | 0.313 | 4.61 | -- | -- | -- | -- |
| 65.2 | 0.376 | 9.73 | 0.189 | -- | -1.11 | -- | -- | 0.176 | -- | 22.08 | 1102 | -- | -- |
| 47.85 | 0.322 | 9.73 | -- | 0.617 | -1.1 | -- | -- | 0.139 | 5.24 | 22.2 | 779 | -- | -- |
| 78.06 | 0.413 | 9.69 | 0.491 | -- | -- | -- | -- | 0.329 | -- | -- | -- | -- | -- |
| 63.72 | 0.373 | 9.7 | -- | 0.623 | -- | -- | -- | 0.261 | 4.59 | -- | -- | -- | -- |
| 65.98 | 0.378 | 9.74 | -- | -- | -1.25 | -- | -- | 0.145 | -- | 21.92 | 1126 | -- | -- |
| 84.42 | 0.429 | 9.71 | -- | -- | -- | -- | -- | 0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.66 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 18 | 45.51 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 18 |
| 34 | 45.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 35 | 45.66 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 54 | 45.80 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 72 | 45.90 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 80 | 45.92 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 85 | 45.94 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 92 | 45.99 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 112 | 46.07 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 113 | 46.07 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 125 | 46.11 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 135 | 46.17 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 147 | 46.21 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 9 |
| 148 | 46.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 160 | 46.25 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 168 | 46.27 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 181 | 46.31 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 182 | 46.31 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 195 | 46.33 | temperature | 20 | 720 | < th | dose dependent | sin | 10 | NA |
| 197 | 46.34 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 199 | 46.35 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 215 | 46.38 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 217 | 46.38 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 278 | 46.49 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 279 | 46.49 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 296 | 46.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 430 | 46.74 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 457 | 46.79 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 467 | 46.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 470 | 46.81 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 488 | 46.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 490 | 46.84 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 19 |
| 547 | 46.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 551 | 46.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 556 | 46.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 567 | 46.94 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 578 | 46.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 659 | 47.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 674 | 47.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 781 | 47.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 873 | 47.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 877 | 47.31 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 878 | 47.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 886 | 47.32 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 899 | 47.34 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 923 | 47.35 | temperature | 20 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 944 | 47.36 | temperature | 20 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 958 | 47.38 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 5 |