BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0193800 Os02g0193800|AK108424
(235 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G38200.1 | chr4:17915293-17922502 FORWARD LENGTH=1688 169 1e-42
AT4G35380.1 | chr4:16819883-16825960 FORWARD LENGTH=1707 139 2e-33
AT1G01960.1 | chr1:330830-337582 REVERSE LENGTH=1751 131 2e-31
AT3G60860.1 | chr3:22484804-22491510 FORWARD LENGTH=1794 113 1e-25
>AT4G38200.1 | chr4:17915293-17922502 FORWARD LENGTH=1688
Length = 1687
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 144/230 (62%), Gaps = 1/230 (0%)
Query: 4 DDEEEANMETTSYAIIKLKNHMAQQLLVVQGIVKLYETHRWSFYAEHMGIILETLSAIAS 63
DD +E +++T SY + + K+H+ QL VVQ + LY H+ S A H+ +ILE LS+I+S
Sbjct: 1457 DDIDEDSLQTMSYVVARTKSHITVQLQVVQVVTDLYRIHQQSLLASHVTVILEILSSISS 1516
Query: 64 HASEVSSESTLLMKFHKACSLLEVSEPAVIHFENESYQSYLKLLQALVHDHPSISEDMKI 123
HA +++S+ L K +ACS+LE+SEP ++HFEN+++Q+YL +LQA+V ++P +S ++ +
Sbjct: 1517 HAHQLNSDLILQKKVRRACSILELSEPPMLHFENDTFQNYLDILQAIVTNNPGVSLELNV 1576
Query: 124 ESHIMLVSEKILRKYLKCAGRERSNDSSGRDPALRWKLPLGTAKKEELSARTSLVLHVMQ 183
ES +M V +IL+ YLKC + R P W LP+G A KEE +AR+ LV+ V++
Sbjct: 1577 ESQLMTVCMQILKMYLKCTLFQGDELEETRQPK-NWILPMGAASKEEAAARSPLVVAVLK 1635
Query: 184 LLGGLERDCFXXXXXXXXXXXXXXIRCEHSSGEVQLALYDIFQSSIGPII 233
L L+RD F +R EHSS +V L +F + +G ++
Sbjct: 1636 ALRELKRDSFKRYAPNFFPLLVELVRSEHSSSQVPQVLSTVFHTCMGAMM 1685
>AT4G35380.1 | chr4:16819883-16825960 FORWARD LENGTH=1707
Length = 1706
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 135/230 (58%), Gaps = 2/230 (0%)
Query: 5 DEEEANMETTSYAIIKLKNHMAQQLLVVQGIVKLYETHRWSFYAEHMGIILETLSAIASH 64
D ++ ++ SY + + K H+ +V+ + LY +++S A H+ I+ + S IASH
Sbjct: 1479 DLDDDSLHIMSYVVSRTKKHIDVLSQIVEVVSDLYRRNQFSLSASHVDILADIFSCIASH 1538
Query: 65 ASEVSSESTLLMKFHKACSLLEVSEPAVIHFENESYQSYLKLLQALVHDHPSISEDMKIE 124
A ++++++ L KF +ACS+ ++EP +++FENE+Y+SY+ LQ +V +P++S+++ +E
Sbjct: 1539 AQQLNTDTVLRRKFKRACSVQNLTEPQLLNFENEAYKSYMMFLQDMVTCNPNVSKELDLE 1598
Query: 125 SHIMLVSEKILRKYLKCAGRERSNDSSGRDPALRWKLPLGTAKKEELSARTSLVLHVMQL 184
S ++ KI++ YLKC + + R P L W LP+ + + EE +ARTSL++ ++
Sbjct: 1599 SRLVTECAKIVKIYLKCTD-PQQQEQQQRKPVL-WVLPMESDRVEEATARTSLLVSSLEA 1656
Query: 185 LGGLERDCFXXXXXXXXXXXXXXIRCEHSSGEVQLALYDIFQSSIGPIIS 234
L LE + +R EH S +V L ++ +S IGPI++
Sbjct: 1657 LCSLEAESLKKHVSSFFPLLVDLVRTEHCSPQVPYVLSNVLKSCIGPILA 1706
>AT1G01960.1 | chr1:330830-337582 REVERSE LENGTH=1751
Length = 1750
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 118/216 (54%), Gaps = 8/216 (3%)
Query: 18 IIKLKNHMAQQLLVVQGIVKLYETHRWSFYAEHMGIILETLSAIASHASEVSSESTLLMK 77
+ K+ + Q+ V+Q + +Y+ +R S A HM ++ + + I S+A +++++ L K
Sbjct: 1538 VTDAKSKASIQIFVIQAVTDIYDMYRMSLTANHMLMLFDAMHGIGSNAHKINADLLLRSK 1597
Query: 78 FHKACSLLEVSEPAVIHFENESYQSYLKLLQALVHDHPSISEDMKIESHIMLVSEKILRK 137
+ S LE E ++ ENES+Q+ + L L+ D P + +IESH++ + ++L
Sbjct: 1598 LQELGSSLESQEAPLLRLENESFQTCMTFLDNLISDQPVGYNEAEIESHLISLCREVLEF 1657
Query: 138 YLKCAGRERSNDSSGRDPALRWKLPLGTAKKEELSARTSLVLHVMQLLGGLERDCFXXXX 197
Y+ N S ++ + RW +P G+ KK+EL+AR LV+ +Q LG + F
Sbjct: 1658 YI--------NISCSKEQSSRWAVPSGSGKKKELTARAPLVVAAIQTLGNMGESLFKKNL 1709
Query: 198 XXXXXXXXXXIRCEHSSGEVQLALYDIFQSSIGPII 233
I CEH SGEVQ+AL D+ Q+S+GP++
Sbjct: 1710 PELFPLIATLISCEHGSGEVQVALSDMLQTSMGPVL 1745
>AT3G60860.1 | chr3:22484804-22491510 FORWARD LENGTH=1794
Length = 1793
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 124/236 (52%), Gaps = 5/236 (2%)
Query: 3 NDDEEEANMETTSYAII-KLKNHMAQQLLVVQGIVKLYETHRWSFYAEHMGIILETLSAI 61
+ +EE T YA I K A QLL++Q ++++Y +R A++ ++++ L +
Sbjct: 1554 DGNEESQRTATHLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPQLSAKNTLVLVDALHGV 1613
Query: 62 ASHASEVSSESTLLMKFHKACSLLEVSEPAVIHFENESYQSYLKLLQALVHDHPS---IS 118
A HA ++S + L + + + ++ +P ++ ENESYQ L LQ LV D
Sbjct: 1614 ALHAHGINSNTILRSRLQELGPMTQMQDPPLLRLENESYQICLTFLQNLVADKTKKEEEE 1673
Query: 119 EDMKIESHIMLVSEKILRKYLKCAGRERSNDS-SGRDPALRWKLPLGTAKKEELSARTSL 177
E+ +IES ++ + +++L Y++ + + S S R RW++PLG+ K+ ELSAR L
Sbjct: 1674 EEEEIESLLVNICQEVLNFYIETSSSAKKLQSESSRASEYRWRIPLGSGKRRELSARAPL 1733
Query: 178 VLHVMQLLGGLERDCFXXXXXXXXXXXXXXIRCEHSSGEVQLALYDIFQSSIGPII 233
++ +Q + L+ F I CEH S EVQ AL D+ S+GP++
Sbjct: 1734 IVATLQAMCTLDEASFEKNLKCLFPLLANLISCEHGSNEVQTALADMLGLSVGPVL 1789
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.131 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,428,459
Number of extensions: 154279
Number of successful extensions: 422
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 4
Length of query: 235
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 140
Effective length of database: 8,502,049
Effective search space: 1190286860
Effective search space used: 1190286860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)