BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0193800 Os02g0193800|AK108424
         (235 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0193800  Hypothetical protein                                446   e-126
Os06g0622800  Armadillo-like helical domain containing protein    292   2e-79
Os03g0246800  Similar to Sec7p-like protein (Fragment)            131   5e-31

>Os02g0193800 Hypothetical protein
          Length = 235

 Score =  446 bits (1148), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/235 (94%), Positives = 221/235 (94%)

Query: 1   IYNDDEEEANMETTSYAIIKLKNHMAQQLLVVQGIVKLYETHRWSFYAEHMGIILETLSA 60
           IYNDDEEEANMETTSYAIIKLKNHMAQQLLVVQGIVKLYETHRWSFYAEHMGIILETLSA
Sbjct: 1   IYNDDEEEANMETTSYAIIKLKNHMAQQLLVVQGIVKLYETHRWSFYAEHMGIILETLSA 60

Query: 61  IASHASEVSSESTLLMKFHKACSLLEVSEPAVIHFENESYQSYLKLLQALVHDHPSISED 120
           IASHASEVSSESTLLMKFHKACSLLEVSEPAVIHFENESYQSYLKLLQALVHDHPSISED
Sbjct: 61  IASHASEVSSESTLLMKFHKACSLLEVSEPAVIHFENESYQSYLKLLQALVHDHPSISED 120

Query: 121 MKIESHIMLVSEKILRKYLKCAGRERSNDSSGRDPALRWKLPLGTAKKEELSARTSLVLH 180
           MKIESHIMLVSEKILRKYLKCAGRERSNDSSGRDPALRWKLPLGTAKKEELSARTSLVLH
Sbjct: 121 MKIESHIMLVSEKILRKYLKCAGRERSNDSSGRDPALRWKLPLGTAKKEELSARTSLVLH 180

Query: 181 VMQLLGGLERDCFXXXXXXXXXXXXXXIRCEHSSGEVQLALYDIFQSSIGPIIST 235
           VMQLLGGLERDCF              IRCEHSSGEVQLALYDIFQSSIGPIIST
Sbjct: 181 VMQLLGGLERDCFRRNLPLFFPLLTNLIRCEHSSGEVQLALYDIFQSSIGPIIST 235



>Os06g0622800 Armadillo-like helical domain containing protein
          Length = 681

 Score =  292 bits (747), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/234 (66%), Positives = 187/234 (79%)

Query: 2   YNDDEEEANMETTSYAIIKLKNHMAQQLLVVQGIVKLYETHRWSFYAEHMGIILETLSAI 61
           Y ++EEEANMETTSYAI+KLKNHMA  LLVVQGI+KLYE HR    ++H+ I+LE +SAI
Sbjct: 448 YGNEEEEANMETTSYAIVKLKNHMALLLLVVQGIIKLYEEHRKYLSSDHINILLEMISAI 507

Query: 62  ASHASEVSSESTLLMKFHKACSLLEVSEPAVIHFENESYQSYLKLLQALVHDHPSISEDM 121
           A+HASEVSSES+LL+KFHKACSL+EVSEPA++HFENESYQ+YLKLLQAL  D+PS+SE+M
Sbjct: 508 ATHASEVSSESSLLLKFHKACSLMEVSEPAIVHFENESYQTYLKLLQALFRDYPSMSEEM 567

Query: 122 KIESHIMLVSEKILRKYLKCAGRERSNDSSGRDPALRWKLPLGTAKKEELSARTSLVLHV 181
            IES I+ V EKILR YL+CA RE SN++  R+ ++   +PLG AKKEEL+ARTSLVL V
Sbjct: 568 DIESQILRVCEKILRIYLQCAQREPSNEALHRNASIHCIVPLGAAKKEELAARTSLVLLV 627

Query: 182 MQLLGGLERDCFXXXXXXXXXXXXXXIRCEHSSGEVQLALYDIFQSSIGPIIST 235
           MQLLG LE D F              IRCEHSSGEVQ ALY IFQSSIGP+++ 
Sbjct: 628 MQLLGNLEEDSFRRVLPWFFPLLVDLIRCEHSSGEVQHALYKIFQSSIGPMLTV 681



>Os03g0246800 Similar to Sec7p-like protein (Fragment)
          Length = 1789

 Score =  131 bits (329), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 121/218 (55%), Gaps = 2/218 (0%)

Query: 16   YAIIKLKNHMAQQLLVVQGIVKLYETHRWSFYAEHMGIILETLSAIASHASEVSSESTLL 75
            +AI   K   A QLL++Q ++++Y  +R    +++  I+ E L  +A+HA +++S++ L 
Sbjct: 1570 FAIGDAKCRAAVQLLLIQAVMEIYNMYRARLSSQNTVILFEALHTVATHAHKINSDNDLR 1629

Query: 76   MKFHKACSLLEVSEPAVIHFENESYQSYLKLLQALVHDHPSISEDMKIESHIMLVSEKIL 135
             K  +  S+ ++ +P ++  ENESYQ  L +LQ +  D       +++ESH++ + +++L
Sbjct: 1630 SKLQELGSMTQMQDPPLLRLENESYQLCLTILQNICLDRSPNERSVEVESHLVGLCKEVL 1689

Query: 136  RKYLKCAGRERSNDSSGRDPALRWKLPLGTAKKEELSARTSLVLHVMQLLGGLERDCFXX 195
              YL  A    S  S    P   W +P+G++K+ EL+AR  LV+  +Q + GL    F  
Sbjct: 1690 EVYLSTAN--PSQLSGAPQPLGHWLIPVGSSKRRELAARAPLVVSTLQAISGLGDSSFEK 1747

Query: 196  XXXXXXXXXXXXIRCEHSSGEVQLALYDIFQSSIGPII 233
                        I CEH S EVQ+AL D+F + +GP++
Sbjct: 1748 NLGQFFPLLAGLISCEHGSSEVQVALSDMFSTWVGPVV 1785



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,625,961
Number of extensions: 221131
Number of successful extensions: 487
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 3
Length of query: 235
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 137
Effective length of database: 11,918,829
Effective search space: 1632879573
Effective search space used: 1632879573
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)