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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0193600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Mad3/BUB1 homology region 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.73 (0.111) R2 : 0.113
β1 : -1.88 (0.308) R2dD : 0.199 R2D : -0.324
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.84 (0.933) R2dE : 1.59 R2E : -1.29
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.7 (2.73) R2dD*E : 0.867 R2D*E : -0.917
γ1 : -0.224 (0.125) R2dN8 : 0.0109 R2N8 : -0.176
σ : 0.966
deviance : 430.17
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.8894
memory length : 4320
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
426.19 0.97 3.72 -1.85 0.258 5.77 -0.367 12.6 -0.223 7.82 0.8889 4320 4 1
473.42 1.02 4.1 -0.0779 0.326 0.583 -0.239 -- -0.0322 7.33 0.7604 4324 4 0.939
426.55 0.962 3.73 -1.86 0.257 5.76 -- 12.5 -0.224 8.16 0.8743 4320 4 1
447.7 0.985 4.1 -0.127 0.389 0.946 -- -- -0.0924 7.41 0.6405 4321 4 1
430.17 0.966 3.73 -1.88 -- 5.84 -- 12.7 -0.224 -- 0.8894 4320 4 1
476.65 1.02 4.11 -0.0654 0.389 -- -0.115 -- -0.0566 6.78 -- -- -- --
476.68 1.02 4.11 -0.0675 0.389 -- -- -- -0.0564 6.74 -- -- -- --
447.35 0.985 4.1 -0.437 -- 1.15 -- -- -0.0147 -- 0.6794 4321 4 0.985
450.9 0.989 4.1 -- 0.346 1.02 -- -- -0.141 7.22 0.62 4321 3.99 1
484.58 1.03 4.11 -0.0586 -- -- -- -- -0.0487 -- -- -- -- --
476.8 1.02 4.1 -- 0.388 -- -- -- -0.0489 6.75 -- -- -- --
456.7 0.995 4.1 -- -- 1.11 -- -- -0.123 -- 0.62 4321 4 1
484.67 1.03 4.11 -- -- -- -- -- -0.0422 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 431.23 radiation 20.0 14400 < th dose independent rect. 17 4
2 431.47 radiation 20.0 14400 < th dose independent rect. 17 7
3 431.63 radiation 10.0 4320 < th dose dependent rect. 19 10
4 431.90 radiation 10.0 4320 < th dose dependent rect. 4 1
7 432.72 temperature 15.0 14400 > th dose independent rect. 9 2
8 432.80 radiation 1.0 14400 < th dose dependent rect. 9 1
10 433.01 radiation 20.0 14400 < th dose independent rect. 17 13
11 433.23 radiation 1.0 14400 > th dose independent rect. 8 2
16 433.96 temperature 15.0 14400 < th dose dependent rect. 4 1
17 433.98 radiation 1.0 14400 < th dose independent rect. 9 2
18 434.17 temperature 15.0 14400 < th dose independent rect. 9 2
22 434.46 radiation 20.0 14400 < th dose independent rect. 17 9
25 435.00 radiation 1.0 4320 < th dose independent rect. 4 1
29 435.29 radiation 20.0 14400 < th dose independent rect. 17 1
42 436.36 radiation 1.0 4320 < th dose independent rect. 19 10
84 438.49 temperature 15.0 14400 < th dose dependent rect. 23 1
90 438.62 temperature 15.0 14400 < th dose independent rect. 22 2
99 438.80 temperature 15.0 14400 < th dose independent rect. 5 7
102 438.84 radiation 10.0 4320 < th dose dependent rect. 1 4
118 439.06 temperature 15.0 14400 > th dose independent rect. 21 3
123 439.09 temperature 15.0 14400 < th dose dependent sin 8 NA
154 439.35 wind 1.0 43200 < th dose independent rect. 20 1
189 439.63 humidity 50.0 14400 < th dose dependent rect. 9 1
204 439.72 wind 1.0 43200 > th dose independent rect. 15 2
243 439.88 wind 1.0 43200 > th dose independent rect. 13 6
257 440.01 humidity 70.0 43200 < th dose independent rect. 21 1
261 440.03 humidity 60.0 14400 > th dose independent rect. 20 1
288 440.22 wind 1.0 43200 < th dose independent rect. 15 2
338 440.58 humidity 50.0 14400 < th dose independent rect. 8 2
361 440.63 wind 1.0 43200 < th dose independent rect. 13 6
413 440.88 wind 1.0 43200 < th dose dependent rect. 16 1
414 440.88 humidity 70.0 14400 < th dose dependent rect. 21 1
442 441.05 temperature 15.0 14400 < th dose independent rect. 24 1
443 441.06 temperature 15.0 14400 < th dose dependent no NA NA
459 441.34 temperature 15.0 14400 < th dose independent rect. 11 1
460 441.34 precipitation 0.1 14400 < th dose independent rect. 4 1
461 441.34 precipitation 0.1 14400 < th dose dependent rect. 4 1
462 441.34 temperature 15.0 14400 < th dose dependent rect. 1 23
470 441.41 humidity 60.0 14400 > th dose independent rect. 4 4
474 441.50 wind 1.0 43200 > th dose independent rect. 20 1
490 441.75 radiation 40.0 4320 > th dose dependent rect. 15 1
506 441.78 temperature 15.0 14400 > th dose independent rect. 11 1
514 441.87 humidity 60.0 14400 < th dose independent rect. 6 1
518 441.87 radiation 20.0 14400 > th dose independent rect. 17 1
569 441.87 humidity 60.0 14400 < th dose dependent rect. 6 1
573 441.87 radiation 20.0 14400 > th dose dependent rect. 17 1
653 441.92 humidity 60.0 14400 > th dose independent rect. 20 4
661 442.00 radiation 20.0 43200 < th dose independent rect. 19 11
666 442.04 precipitation 0.1 14400 > th dose dependent rect. 4 1
674 442.15 precipitation 0.1 14400 > th dose independent rect. 4 1
692 442.31 temperature 15.0 14400 < th dose independent rect. 21 16
695 442.33 humidity 90.0 43200 < th dose independent rect. 24 3
697 442.36 radiation 40.0 14400 < th dose dependent rect. 18 3
705 442.48 humidity 90.0 43200 < th dose independent rect. 24 1
719 442.64 humidity 60.0 14400 > th dose independent rect. 1 7
735 442.81 wind 1.0 43200 < th dose independent rect. 13 1
738 442.85 wind 5.0 1440 > th dose dependent rect. 13 1
779 443.07 radiation 40.0 14400 < th dose dependent rect. 18 6
782 443.09 humidity 90.0 43200 < th dose independent rect. 2 1
794 443.17 humidity 50.0 43200 < th dose independent rect. 17 18
804 443.28 radiation 40.0 43200 < th dose dependent rect. 19 10
805 443.29 radiation 40.0 4320 > th dose independent rect. 15 1
824 443.35 wind 1.0 43200 > th dose independent rect. 13 1
836 443.42 radiation 10.0 43200 < th dose dependent rect. 18 12
837 443.42 radiation 40.0 43200 < th dose dependent rect. 18 12
843 443.47 radiation 20.0 43200 < th dose independent rect. 4 2
847 443.48 humidity 90.0 14400 < th dose dependent rect. 5 2
849 443.50 humidity 60.0 14400 > th dose independent rect. 19 13
851 443.51 humidity 60.0 14400 > th dose independent rect. 7 1
862 443.62 radiation 40.0 43200 < th dose dependent rect. 4 1
865 443.66 radiation 40.0 14400 < th dose dependent rect. 18 8
893 443.86 humidity 70.0 4320 < th dose independent rect. 16 1
899 443.88 temperature 15.0 14400 < th dose independent rect. 24 13
903 443.90 radiation 1.0 4320 > th dose independent rect. 4 1
915 443.90 radiation 1.0 4320 > th dose dependent rect. 4 1
921 443.90 wind 1.0 43200 < th dose dependent rect. 12 7
929 443.96 temperature 15.0 14400 < th dose independent rect. 9 19
931 443.98 humidity 60.0 14400 > th dose independent rect. 21 7
933 443.98 humidity 50.0 14400 > th dose dependent rect. 4 3
955 444.06 humidity 60.0 43200 < th dose dependent rect. 18 2
966 444.15 radiation 20.0 43200 < th dose independent rect. 1 6
975 444.21 radiation 20.0 43200 < th dose independent rect. 6 1
986 444.25 temperature 15.0 14400 < th dose independent sin 2 NA
988 444.27 radiation 20.0 43200 < th dose independent rect. 23 8
993 444.30 temperature 15.0 14400 > th dose independent rect. 9 18