BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0193600 Os02g0193600|AK060499
         (398 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33560.2  | chr2:14213810-14215918 REVERSE LENGTH=397          339   2e-93
AT5G05510.1  | chr5:1630651-1632568 REVERSE LENGTH=472            108   5e-24
AT2G20635.1  | chr2:8900410-8903384 FORWARD LENGTH=526             90   2e-18

>AT2G33560.2 | chr2:14213810-14215918 REVERSE LENGTH=397
          Length = 396

 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 184/372 (49%), Positives = 235/372 (63%), Gaps = 18/372 (4%)

Query: 41  EWETFKENVRPLKRGRNVGLLNRALKXXXXXXXXXXXXXXXXKMIEAIDEYSGEDPLQPW 100
           EWE FKENVRPLKRGRNVG+LN ALK                 +IEAIDEY G+DPL PW
Sbjct: 26  EWELFKENVRPLKRGRNVGILNHALKSHSDHQLRKNLIEKRRNLIEAIDEYEGDDPLSPW 85

Query: 101 IDCIKWVQESFPTGGDCSGLVVIYEQCVRAFWHDDRYKNDLRYLKVWLEYAGNCADSEVI 160
           I+CIKWVQE+FP GG+CSGL+VIYEQCVR FWH +RYK+DLRYLKVWLEYA +CAD+EVI
Sbjct: 86  IECIKWVQEAFPPGGECSGLLVIYEQCVRKFWHSERYKDDLRYLKVWLEYAEHCADAEVI 145

Query: 161 FRFLEANQIGQSHTNYYLSYASVMESKNKLKKANEIFNLGIARKAKPVEKLETTYRAFLQ 220
           ++FLE N+IG++H  YY++YA  +E KNK+K ANEIFNLGI+R AKPVEKL   Y+ F+ 
Sbjct: 146 YKFLEVNEIGKTHAVYYIAYALHIEFKNKVKTANEIFNLGISRDAKPVEKLNDAYKKFMV 205

Query: 221 RSSKKK--AHPEXXXXXXXHPVRNFGTVLNRGEIRGQH----AENSHLVKTLQRVDVNRP 274
           R+ ++   A  +        P R+FGT+L+RG+   +     + N    K         P
Sbjct: 206 RTMRRSNTADEQEPKENNDLPSRSFGTLLSRGDNNARRQALGSSNPQAKKLKPNQSSKTP 265

Query: 275 LAVYTDENSLPSHG----LARTRSNNTAWQTLGSQADRNKENNMRPAKWTSHKIPQKVGS 330
            A+Y D  S  + G      ++R    +W  LG +A+RNKENN  P KW S K+PQK   
Sbjct: 266 FAIYADAVSDTTSGNQPESDKSRPEFGSWLMLGGRAERNKENNSLPRKWASFKVPQKPIV 325

Query: 331 RAAVQPTRVSSIEVFVDDECAEEPVPQVPK-----STKPSILKLRQATSRNLKQETELLM 385
           R  V     S+ EVFVD+E   E   +  K     S+  ++L L     R +K+ETELL 
Sbjct: 326 R-TVAAASASTFEVFVDEEECTEEEEEKKKNDETISSSSNVLPLNGG--REIKKETELLR 382

Query: 386 ENPLRNFPLTSL 397
           +NPLR+FP  S 
Sbjct: 383 QNPLRHFPPNSF 394



>AT5G05510.1 | chr5:1630651-1632568 REVERSE LENGTH=472
          Length = 471

 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 26/306 (8%)

Query: 84  MIEAIDEYSGEDPLQPWIDCIKWVQESFPTGGDCSGLVVIYEQCVRAFWHDDRYKNDLRY 143
           +I  I  YSG+D L PWI  +K ++ES P+      L    ++C  +F  D RYKND RY
Sbjct: 15  LIVDIKSYSGKDHLLPWIRGVKKMKESLPSQILNEKLPRFLQKCAESFESDKRYKNDSRY 74

Query: 144 LKVWLEYAGNCADSEVIFRFLEANQIGQSHTNYYLSYASVMESKNKLKKANEIFNLGIAR 203
           ++VWL+      D   + R +EA  IG   + +Y +YA   E   + + A +++ LG+  
Sbjct: 75  IRVWLQLMDFVDDPRALLRTMEAKSIGTKRSLFYQAYALHYEKMKRFEDAEKMYRLGVQN 134

Query: 204 KAKPVEKLETTYRAF---LQRSSKKKAHPEXXXXXXXH----------PVRNFGTVLNRG 250
            A+P+++L+ +Y  F   ++R  KKK   +       H          PV NF      G
Sbjct: 135 LAEPMDELQKSYLQFVTRMERHKKKKTQRQEQKLSGKHHKVDERQQHEPVLNFVDKAIVG 194

Query: 251 EIRGQHAENSHLVKTLQRVDVNRPLAVYTDEN-------SLPSHGLARTRSNNTAWQTLG 303
           +   ++A +  LV       +N   A+ T  N       + P    +R RS N   Q   
Sbjct: 195 KPEAENACHHGLVDPT----INMKEAMNTINNMFKEPIETAPLQRRSRQRSQNKENQGCN 250

Query: 304 SQADRNKENNMRPAKWTSHKIPQKVGSRAAVQPTRVSSIEVFVDDECAEEPVPQVPKSTK 363
           +  +   + N+     TS K  +   ++   QP +  S E+F+DDE  +E   +  ++ K
Sbjct: 251 NSFEVFLDENLECETGTSGKA-KTSTTQCGSQPNQ-ESFEIFIDDENTDETADENDEAGK 308

Query: 364 PSILKL 369
             +  L
Sbjct: 309 AFVFLL 314



>AT2G20635.1 | chr2:8900410-8903384 FORWARD LENGTH=526
          Length = 525

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 1/132 (0%)

Query: 95  DPLQPWIDCIKWVQESFPTGGDCS-GLVVIYEQCVRAFWHDDRYKNDLRYLKVWLEYAGN 153
           DPL PW+  IK   E    G +    L  +   C+  +  D RY+NDLR+LK+W  Y   
Sbjct: 11  DPLFPWLMEIKNSMEDLYAGKNSGYDLDKLLFDCISTYKKDSRYRNDLRFLKIWFLYLEG 70

Query: 154 CADSEVIFRFLEANQIGQSHTNYYLSYASVMESKNKLKKANEIFNLGIARKAKPVEKLET 213
             D E ++R +E  +I + H+  Y  YA  +E K   ++AN ++  G++RKA+P ++L+ 
Sbjct: 71  REDFERVYREIEETEICKGHSLLYEWYAIFLEVKGLWRRANSVYQTGLSRKAEPFDRLKE 130

Query: 214 TYRAFLQRSSKK 225
            +  FLQR SK+
Sbjct: 131 AHSLFLQRISKR 142



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,830,189
Number of extensions: 313972
Number of successful extensions: 762
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 756
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,337,553
Effective search space: 2476253241
Effective search space used: 2476253241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)