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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0179600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function T31B5_30_vWA family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.14 (0.0439) R2 : 0.572
β1 : 4.05 (0.169) R2dD : 0.647 R2D : 0.347
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.54 (0.194) R2dE : 0.0748 R2E : -0.172
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.22 (0.1) R2dN8 : 0.223 R2N8 : -0.0264
σ : 0.804
deviance : 298.28
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.87
memory length : 11975
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
294.01 0.806 4.16 3.8 0.414 -1.42 0.341 -0.958 1.18 2.76 0.8826 11573 -- --
295.24 0.8 4.16 4.02 0.411 -1.24 0.353 -- 1.19 2.54 0.8724 11566 -- --
294.31 0.799 4.16 3.81 0.39 -1.43 -- -0.949 1.18 2.83 0.88 11608 -- --
295.58 0.801 4.16 4 0.388 -1.25 -- -- 1.19 2.74 0.8778 11607 -- --
296.51 0.802 4.16 3.91 -- -1.66 -- -1.01 1.2 -- 0.8702 11926 -- --
328.47 0.85 4.21 3.56 0.418 -- 0.272 -- 0.904 2.53 -- -- -- --
328.73 0.849 4.21 3.55 0.418 -- -- -- 0.903 2.46 -- -- -- --
298.28 0.804 4.14 4.05 -- -1.54 -- -- 1.22 -- 0.87 11975 -- --
601.24 1.14 4.23 -- 0.355 -1.23 -- -- 0.737 2.44 9.88 9909 -- --
339.03 0.86 4.21 3.57 -- -- -- -- 0.913 -- -- -- -- --
660.74 1.2 4.3 -- 0.487 -- -- -- 0.508 2.57 -- -- -- --
507.61 1.05 4.32 -- -- -2.37 -- -- 0.438 -- 9.719 47520 -- --
674.65 1.21 4.3 -- -- -- -- -- 0.518 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 283.80 radiation 10.0 43200 < th dose independent rect. 13 1
2 283.95 radiation 10.0 43200 < th dose dependent rect. 13 1
3 284.14 wind 5.0 43200 > th dose dependent rect. 24 1
4 284.16 radiation 10.0 43200 < th dose independent rect. 16 6
5 284.16 radiation 10.0 43200 < th dose independent rect. 16 9
8 284.16 radiation 10.0 43200 < th dose independent rect. 16 13
9 284.17 radiation 10.0 43200 < th dose independent rect. 16 4
14 284.17 radiation 10.0 43200 < th dose independent rect. 15 16
20 284.51 radiation 10.0 43200 < th dose independent rect. 11 20
22 284.56 radiation 10.0 43200 < th dose independent rect. 11 3
25 284.63 radiation 10.0 43200 < th dose dependent rect. 18 12
27 284.67 radiation 10.0 43200 < th dose independent sin 14 NA
43 285.03 humidity 50.0 43200 < th dose dependent rect. 13 1
46 285.09 wind 3.0 43200 > th dose independent rect. 14 1
52 285.20 atmosphere 1010.0 14400 < th dose independent rect. 16 2
57 285.29 radiation 10.0 43200 < th dose independent rect. 11 7
105 285.51 radiation 1.0 43200 > th dose dependent rect. 17 13
117 285.53 precipitation 0.1 43200 > th dose dependent rect. 16 4
123 285.60 atmosphere 1005.0 14400 > th dose dependent rect. 17 1
125 285.64 wind 3.0 43200 < th dose independent rect. 13 2
129 285.67 radiation 30.0 43200 < th dose independent rect. 15 17
131 285.68 atmosphere 1010.0 14400 > th dose independent rect. 16 1
139 285.72 wind 5.0 43200 < th dose dependent rect. 14 1
166 285.81 radiation 20.0 43200 < th dose dependent rect. 24 6
171 285.83 radiation 20.0 43200 < th dose dependent rect. 4 2
173 285.84 wind 1.0 43200 > th dose dependent rect. 14 1
227 285.94 atmosphere 1010.0 14400 < th dose independent rect. 12 6
239 285.99 atmosphere 1010.0 14400 < th dose independent rect. 12 8
266 286.10 radiation 10.0 43200 < th dose independent rect. 5 13
293 286.14 radiation 10.0 43200 < th dose independent no NA NA
351 286.20 atmosphere 1010.0 14400 > th dose independent rect. 12 8
352 286.21 atmosphere 1010.0 14400 > th dose independent rect. 12 6
377 286.27 atmosphere 1010.0 14400 < th dose independent rect. 12 2
381 286.28 atmosphere 1010.0 14400 > th dose independent rect. 12 1
410 286.33 radiation 10.0 43200 < th dose independent rect. 15 23
456 286.49 precipitation 0.1 43200 < th dose independent rect. 22 1
459 286.49 precipitation 0.1 43200 < th dose dependent rect. 22 1
464 286.51 precipitation 0.1 43200 > th dose dependent rect. 13 2
477 286.56 humidity 70.0 43200 > th dose independent rect. 10 17
495 286.59 wind 5.0 43200 > th dose independent rect. 24 1
497 286.59 atmosphere 1005.0 14400 > th dose dependent rect. 20 1
500 286.60 precipitation 0.1 43200 > th dose independent rect. 22 1
503 286.60 precipitation 0.1 43200 > th dose dependent rect. 22 1
512 286.64 humidity 70.0 43200 < th dose independent rect. 11 16
537 286.71 humidity 70.0 43200 > th dose independent sin 17 NA
540 286.71 humidity 70.0 43200 > th dose independent rect. 10 22
559 286.73 precipitation 0.1 43200 > th dose dependent rect. 13 7
565 286.74 humidity 70.0 43200 > th dose independent rect. 7 19
573 286.75 humidity 70.0 43200 > th dose independent rect. 24 20
584 286.77 wind 5.0 43200 < th dose independent rect. 24 1
603 286.79 humidity 70.0 43200 < th dose independent rect. 11 21
626 286.82 radiation 40.0 43200 > th dose dependent rect. 13 1
692 286.90 humidity 70.0 43200 < th dose independent sin 17 NA
720 286.92 humidity 70.0 43200 < th dose independent rect. 11 1
721 286.92 humidity 70.0 43200 > th dose independent rect. 18 2
732 286.93 precipitation 0.1 43200 > th dose independent rect. 17 3
738 286.93 humidity 70.0 43200 < th dose independent rect. 24 20
742 286.94 humidity 70.0 43200 > th dose independent no NA NA
758 286.95 humidity 70.0 43200 < th dose independent rect. 7 19
822 287.01 atmosphere 1005.0 14400 > th dose dependent sin 18 NA
834 287.02 humidity 70.0 43200 > th dose independent rect. 16 23
845 287.03 humidity 70.0 43200 > th dose independent rect. 13 23
848 287.04 precipitation 0.1 43200 < th dose independent rect. 17 3
850 287.04 humidity 70.0 43200 > th dose independent rect. 16 6
858 287.04 precipitation 0.1 43200 < th dose dependent rect. 17 3
883 287.07 humidity 50.0 43200 < th dose independent rect. 12 2
936 287.12 radiation 1.0 43200 > th dose dependent rect. 13 1
950 287.14 humidity 70.0 43200 < th dose independent no NA NA