Os02g0170900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lytic transglycosylase, catalytic domain containing protein.
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Os02g0170900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lytic transglycosylase, catalytic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128 | 0.532 | 5.98 | -0.765 | 2.1 | 1.14 | 0.922 | -0.0382 | -0.0935 | 6.63 | 1014 | 5016 | -- | -- |
| 128 | 0.527 | 5.97 | -0.752 | 2.1 | 1.14 | 0.917 | -- | -0.0904 | 6.63 | 1014 | 4982 | -- | -- |
| 130.12 | 0.531 | 5.98 | -0.734 | 2.1 | 1.14 | -- | -0.00248 | -0.0919 | 6.63 | 1014 | 4959 | -- | -- |
| 130.12 | 0.531 | 5.98 | -0.734 | 2.1 | 1.14 | -- | -- | -0.0916 | 6.63 | 1014 | 4959 | -- | -- |
| 356.26 | 0.879 | 6.01 | -0.618 | -- | 1.34 | -- | 0.342 | -0.0383 | -- | 1015 | 4432 | -- | -- |
| 169.78 | 0.611 | 5.94 | -0.632 | 2.12 | -- | 0.829 | -- | 0.0848 | 6.62 | -- | -- | -- | -- |
| 171.51 | 0.613 | 5.94 | -0.62 | 2.12 | -- | -- | -- | 0.0823 | 6.62 | -- | -- | -- | -- |
| 356.56 | 0.879 | 6.02 | -0.681 | -- | 1.35 | -- | -- | -0.0561 | -- | 1015 | 4444 | -- | -- |
| 143.16 | 0.557 | 5.96 | -- | 2.08 | 1.07 | -- | -- | -0.0121 | 6.66 | 1014 | 4717 | -- | -- |
| 406.43 | 0.942 | 5.98 | -0.569 | -- | -- | -- | -- | 0.125 | -- | -- | -- | -- | -- |
| 181.63 | 0.63 | 5.92 | -- | 2.12 | -- | -- | -- | 0.151 | 6.63 | -- | -- | -- | -- |
| 366.91 | 0.892 | 6 | -- | -- | 1.26 | -- | -- | 0.0271 | -- | 1014 | 4360 | -- | -- |
| 414.97 | 0.951 | 5.96 | -- | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.34 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 5 | 17 |
| 16 | 129.56 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 6 | 14 |
| 24 | 129.61 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 6 | 14 |
| 35 | 129.70 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 23 | 22 |
| 61 | 129.83 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 15 | 22 |
| 74 | 129.87 | atmosphere | 1015 | 4320 | > th | dose dependent | no | NA | NA |
| 80 | 129.91 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 19 | 23 |
| 83 | 129.93 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 23 | NA |
| 96 | 129.95 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 110 | 130.01 | temperature | 10 | 90 | > th | dose dependent | rect. | 3 | 22 |
| 114 | 130.03 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 23 | NA |
| 128 | 130.06 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 23 | NA |
| 134 | 130.09 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 365 | 131.20 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 9 | NA |
| 397 | 131.33 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 445 | 131.49 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 500 | 131.68 | atmosphere | 1015 | 4320 | < th | dose independent | no | NA | NA |
| 519 | 131.73 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 9 | 23 |
| 529 | 131.75 | atmosphere | 1015 | 4320 | > th | dose independent | no | NA | NA |
| 542 | 131.79 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 9 | 23 |
| 556 | 131.82 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 16 | 23 |
| 581 | 131.87 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 2 | 6 |
| 584 | 131.87 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 588 | 131.88 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 593 | 131.89 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 634 | 131.96 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 649 | 131.98 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 657 | 131.99 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 9 | 4 |
| 876 | 132.25 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 893 | 132.26 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 950 | 132.33 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 992 | 132.37 | humidity | 50 | 14400 | < th | dose independent | rect. | 13 | 1 |