BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0170900 Os02g0170900|AK111491
         (419 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0170900  Lytic transglycosylase, catalytic domain conta...   877   0.0  

>Os02g0170900 Lytic transglycosylase, catalytic domain containing protein
          Length = 419

 Score =  877 bits (2266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/419 (100%), Positives = 419/419 (100%)

Query: 1   MAISFKYWDDCLDPEDMQLMWADPHVSKEWIDAGEGPGQKVHLSRDPDGEAYLTQTEMMA 60
           MAISFKYWDDCLDPEDMQLMWADPHVSKEWIDAGEGPGQKVHLSRDPDGEAYLTQTEMMA
Sbjct: 1   MAISFKYWDDCLDPEDMQLMWADPHVSKEWIDAGEGPGQKVHLSRDPDGEAYLTQTEMMA 60

Query: 61  VAAITVHKHFKSQLDPYMIGALAEIASGRRLFVDNYDRKTKEIKAGIMQVTIEVAQWLGR 120
           VAAITVHKHFKSQLDPYMIGALAEIASGRRLFVDNYDRKTKEIKAGIMQVTIEVAQWLGR
Sbjct: 61  VAAITVHKHFKSQLDPYMIGALAEIASGRRLFVDNYDRKTKEIKAGIMQVTIEVAQWLGR 120

Query: 121 ELGYKYYDIEEDANLLYWPFVNVYFGAAYAKWLFSCDDKERTEEFVVRAYKGGKKKAVHK 180
           ELGYKYYDIEEDANLLYWPFVNVYFGAAYAKWLFSCDDKERTEEFVVRAYKGGKKKAVHK
Sbjct: 121 ELGYKYYDIEEDANLLYWPFVNVYFGAAYAKWLFSCDDKERTEEFVVRAYKGGKKKAVHK 180

Query: 181 STSPIFQRYLYVKEALLSMRQPESFNDLTPNLLANSSSTEGQLIYWDSKVSEVDMDAMWS 240
           STSPIFQRYLYVKEALLSMRQPESFNDLTPNLLANSSSTEGQLIYWDSKVSEVDMDAMWS
Sbjct: 181 STSPIFQRYLYVKEALLSMRQPESFNDLTPNLLANSSSTEGQLIYWDSKVSEVDMDAMWS 240

Query: 241 QPDVIKEWTKSGERRGNVRFSHDSKRRPYLSRVEVKAVAEITISRHLSSKGVTPEALAAL 300
           QPDVIKEWTKSGERRGNVRFSHDSKRRPYLSRVEVKAVAEITISRHLSSKGVTPEALAAL
Sbjct: 241 QPDVIKEWTKSGERRGNVRFSHDSKRRPYLSRVEVKAVAEITISRHLSSKGVTPEALAAL 300

Query: 301 AEVCSMRFVHGVRSRTGLMGIDYPTAAWLYRDCGHRAYTVSSVDDLYNPFTSMYFGAAYL 360
           AEVCSMRFVHGVRSRTGLMGIDYPTAAWLYRDCGHRAYTVSSVDDLYNPFTSMYFGAAYL
Sbjct: 301 AEVCSMRFVHGVRSRTGLMGIDYPTAAWLYRDCGHRAYTVSSVDDLYNPFTSMYFGAAYL 360

Query: 361 GWLSQYEGRERSHEFIVQAYLGGPENVSLQETGPFWNKFLEALRLYQDPKKEQASCCIL 419
           GWLSQYEGRERSHEFIVQAYLGGPENVSLQETGPFWNKFLEALRLYQDPKKEQASCCIL
Sbjct: 361 GWLSQYEGRERSHEFIVQAYLGGPENVSLQETGPFWNKFLEALRLYQDPKKEQASCCIL 419



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,044,920
Number of extensions: 630784
Number of successful extensions: 1515
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1507
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 316
Effective length of database: 11,657,759
Effective search space: 3683851844
Effective search space used: 3683851844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)