BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0170900 Os02g0170900|AK111491
         (419 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16290.1  | chr1:5570938-5573538 REVERSE LENGTH=420            474   e-134

>AT1G16290.1 | chr1:5570938-5573538 REVERSE LENGTH=420
          Length = 419

 Score =  474 bits (1221), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/423 (53%), Positives = 299/423 (70%), Gaps = 8/423 (1%)

Query: 1   MAISFKYWDDCLDPEDMQLMWADPHVSKEWIDAGEGPGQKVHLSRDPDGEAYLTQTEMMA 60
           MA SF +W+DC++PED++ MW DP VS EWID GE  GQKVHLSRDPDG+ YLTQTEM A
Sbjct: 1   MANSFTFWNDCVEPEDLEEMWMDPAVSAEWIDVGETKGQKVHLSRDPDGQPYLTQTEMRA 60

Query: 61  VAAITVHKHFKSQLDPYMIGALAEIASGRRLFVDNYDRKTKEIKAGIMQVTIEVAQWLGR 120
           V+ ITV +HF S LD  MI A+AE+ S R+  +  Y +KTKE   GI+QV  + A WL  
Sbjct: 61  VSDITVRRHFDSILDSEMICAIAELESDRKPLIMRYSKKTKETGLGILQVFEKTAAWLAG 120

Query: 121 ELGYKYYDIEEDANLLYWPFVNVYFGAAYAKWLFSCDDKERTEEFVVRAYKGGKKKAVHK 180
             GY+ Y+++++ +LL+ PF+NVYFGAAY KWL    + +R+EEFVVRAY GG KKA HK
Sbjct: 121 GQGYQAYNVDDNPDLLHKPFINVYFGAAYLKWLTDYQNNQRSEEFVVRAYNGGTKKATHK 180

Query: 181 STSPIFQRYLYVKEALLSMRQ----PESFNDLTPNLLANSSSTEGQLIYWDSKVSEVDMD 236
           ST P ++RYL VKE+L S +     P SF    P     S  +     YWDS+ S  DM+
Sbjct: 181 STLPYWKRYLAVKESLPSRKHGDAGPSSFRPTNPA----SPGSNTDFTYWDSRASPEDME 236

Query: 237 AMWSQPDVIKEWTKSGERRGNVRFSHDSKRRPYLSRVEVKAVAEITISRHLSSKGVTPEA 296
            MW+Q ++ KEWTKS E RG VRFS D ++RPYLSR E+KAVAEI +S++ S+KG+    
Sbjct: 237 DMWNQSEICKEWTKSKEERGKVRFSQDGEKRPYLSRGELKAVAEIIVSKYFSTKGIRVPL 296

Query: 297 LAALAEVCSMRFVHGVRSRTGLMGIDYPTAAWLYRDCGHRAYTVSSVDDLYNPFTSMYFG 356
           + A+A+   MRFV+G++   G++G+DY TA+WLY + G+RAY V S DDL  PF SMYFG
Sbjct: 297 VCAIADTVCMRFVNGIKKHVGILGVDYSTASWLYSELGYRAYRVDSADDLTKPFISMYFG 356

Query: 357 AAYLGWLSQYEGRERSHEFIVQAYLGGPENVSLQETGPFWNKFLEALRLYQDPKKEQASC 416
            AYL WLS+YEG +RS++FIVQAY+ GP++V L+E+ P W KF +AL  Y++ K++  SC
Sbjct: 357 VAYLVWLSEYEGSQRSNQFIVQAYMKGPDHVDLEESCPLWLKFEQALSYYEESKRDSGSC 416

Query: 417 CIL 419
            IL
Sbjct: 417 VIL 419



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,625,718
Number of extensions: 405694
Number of successful extensions: 877
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 868
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 318
Effective length of database: 8,337,553
Effective search space: 2651341854
Effective search space used: 2651341854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)