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Os02g0169800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0224) R2 : 0.451
β1 : -1.32 (0.0819) R2dD : 0.323 R2D : 0.36
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.359 (0.0477) R2dN8 : 0.091 R2N8 : 0.128
σ : 0.42
deviance : 80.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.23 0.394 10.7 -1.79 0.249 0.288 0.141 -7.25 0.283 22.8 28.41 247 -- --
73.18 0.398 10.6 -1.29 0.182 -0.369 0.151 -- 0.336 0.127 29.71 248 -- --
70.31 0.391 10.7 -1.79 0.248 0.27 -- -7.11 0.281 22.7 28.33 239 -- --
72.79 0.397 10.6 -1.25 0.229 -0.438 -- -- 0.319 22.9 29.8 280 -- --
74.04 0.401 10.7 -1.72 -- 0.174 -- -6.11 0.289 -- 28.19 227 -- --
76.6 0.41 10.6 -1.31 0.236 -- 0.376 -- 0.356 0.921 -- -- -- --
77.11 0.411 10.6 -1.33 0.237 -- -- -- 0.355 0.272 -- -- -- --
76.07 0.406 10.6 -1.27 -- -0.54 -- -- 0.327 -- 29.5 210 -- --
114.35 0.498 10.6 -- 0.272 -0.776 -- -- 0.457 21 29.3 256 -- --
80.66 0.42 10.6 -1.32 -- -- -- -- 0.359 -- -- -- -- --
123.44 0.52 10.6 -- 0.22 -- -- -- 0.503 24 -- -- -- --
118.29 0.507 10.6 -- -- -0.692 -- -- 0.462 -- 29.28 227 -- --
126.48 0.525 10.6 -- -- -- -- -- 0.505 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.36 temperature 30 270 < th dose independent rect. 13 23
3 69.62 humidity 90 10 < th dose dependent rect. 15 18
7 69.73 humidity 90 10 < th dose dependent rect. 13 20
10 69.90 temperature 30 270 > th dose independent rect. 11 6
12 70.00 humidity 60 270 > th dose independent rect. 7 12
13 70.08 humidity 60 270 > th dose independent rect. 7 21
14 70.09 humidity 80 90 < th dose independent rect. 13 7
19 70.24 temperature 30 270 < th dose independent rect. 7 12
20 70.24 atmosphere 1010 30 < th dose independent rect. 9 21
21 70.25 temperature 30 270 > th dose independent rect. 18 23
58 70.38 humidity 70 270 < th dose independent rect. 12 5
60 70.38 humidity 90 10 < th dose dependent rect. 13 8
74 70.41 temperature 20 30 > th dose independent rect. 9 21
120 70.44 humidity 90 10 < th dose dependent rect. 15 6
121 70.45 temperature 30 270 > th dose independent sin 22 NA
139 70.53 temperature 30 270 < th dose independent no NA NA
140 70.55 humidity 70 90 > th dose independent sin 15 NA
159 70.59 radiation 20 720 < th dose independent rect. 16 17
162 70.59 humidity 90 270 < th dose dependent rect. 11 9
168 70.61 humidity 80 270 < th dose dependent rect. 12 5
170 70.61 temperature 25 720 > th dose dependent rect. 7 7
176 70.65 temperature 30 270 > th dose independent no NA NA
276 70.67 humidity 80 30 < th dose independent rect. 15 6
299 70.70 temperature 30 270 > th dose independent rect. 15 23
302 70.70 radiation 1 30 > th dose dependent rect. 15 18
322 70.72 humidity 60 720 > th dose independent rect. 7 6
335 70.75 temperature 30 720 < th dose independent rect. 7 4
338 70.76 humidity 70 90 < th dose independent rect. 19 13
355 70.83 temperature 30 270 < th dose independent rect. 7 21
357 70.83 temperature 10 30 > th dose dependent rect. 9 21
371 70.86 temperature 30 720 < th dose independent rect. 9 2
372 70.86 humidity 70 270 > th dose independent rect. 14 8
400 70.92 temperature 20 90 > th dose independent rect. 9 14
408 70.94 temperature 25 720 > th dose dependent sin 5 NA
424 70.97 temperature 30 720 < th dose independent rect. 1 10
437 71.00 humidity 90 30 < th dose dependent rect. 13 12
439 71.01 humidity 70 270 < th dose independent sin 18 NA
440 71.01 humidity 50 10 > th dose dependent sin 15 NA
444 71.02 humidity 70 270 > th dose independent sin 18 NA
446 71.02 humidity 50 30 > th dose independent rect. 9 21
450 71.03 humidity 60 270 < th dose independent rect. 13 1
482 71.06 temperature 30 270 < th dose independent rect. 24 23
494 71.08 temperature 30 270 < th dose independent sin 3 NA
498 71.08 humidity 70 30 > th dose dependent sin 16 NA
518 71.10 humidity 70 90 < th dose independent sin 15 NA
522 71.10 humidity 60 720 > th dose independent rect. 23 15
539 71.11 humidity 80 30 < th dose dependent rect. 19 14
576 71.15 wind 1 90 > th dose independent rect. 23 10
577 71.15 humidity 70 270 > th dose independent rect. 15 13
584 71.16 humidity 60 270 > th dose independent sin 23 NA
585 71.16 radiation 20 720 < th dose independent rect. 8 1
615 71.18 humidity 70 90 < th dose independent rect. 19 1
658 71.22 humidity 90 10 < th dose dependent rect. 15 10
673 71.23 radiation 20 720 > th dose dependent rect. 8 1
699 71.25 radiation 30 720 > th dose dependent rect. 15 18
723 71.29 temperature 30 720 < th dose independent sin 7 NA
727 71.29 temperature 30 270 < th dose independent rect. 4 14
738 71.30 atmosphere 1010 90 < th dose independent rect. 9 14
740 71.30 humidity 80 10 < th dose independent rect. 13 20
749 71.31 temperature 30 270 < th dose independent sin 20 NA
797 71.33 humidity 80 90 < th dose dependent rect. 19 1
807 71.34 temperature 30 270 < th dose independent rect. 20 23
821 71.35 humidity 70 90 < th dose independent rect. 15 17
831 71.36 temperature 30 270 < th dose independent sin 17 NA
837 71.36 temperature 30 270 > th dose dependent rect. 15 23
852 71.38 humidity 60 720 > th dose independent rect. 9 4
901 71.41 humidity 70 30 > th dose independent rect. 18 12
921 71.43 temperature 25 90 > th dose independent rect. 24 9
924 71.43 radiation 20 720 > th dose dependent rect. 6 3
950 71.44 temperature 25 90 > th dose dependent rect. 12 8
963 71.46 humidity 90 30 < th dose dependent sin 15 NA
985 71.48 radiation 20 720 > th dose independent rect. 8 1
987 71.48 temperature 30 270 < th dose independent rect. 14 9