BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0169800 Os02g0169800|AK065409
         (314 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G02560.1  | chr2:690345-697342 FORWARD LENGTH=1220             366   e-102

>AT2G02560.1 | chr2:690345-697342 FORWARD LENGTH=1220
          Length = 1219

 Score =  366 bits (939), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/283 (63%), Positives = 220/283 (77%), Gaps = 2/283 (0%)

Query: 2   LNKEGFKADQDIEPKLTTTVLQQLEDTSGEVSGLAVKCLAPLVKKVGEDSVVEMTNILCD 61
           LNK+ FK D D+E +L++ +LQQL+D +G+VSGLAVKCLAPLVKKVGE+ +VEMTN LCD
Sbjct: 34  LNKDSFKIDLDLEVRLSSIILQQLDDVAGDVSGLAVKCLAPLVKKVGEERIVEMTNKLCD 93

Query: 62  KLLNGKDQHRDTASIALKTIIAEVTTTTLAEKILVSLAPQLIKGATA-GKSAEVKCECLD 120
           KLL+GKDQHRDTASIAL+T++A++  T LA  ILV+L PQ+I G +  G S+ +KCECL+
Sbjct: 94  KLLHGKDQHRDTASIALRTVVAQIAPT-LAPSILVTLTPQMIGGISGQGMSSGIKCECLE 152

Query: 121 ILGDVLHRFGNLITKDHDCMXXXXXXXXXXXXXXVRKKSISCIXXXXXXXXXXXXXKATF 180
           I+ DV+ ++G+L+T DH+ +              VRKK+++CI             KAT 
Sbjct: 153 IMCDVVQKYGSLMTDDHEKLLNTLLLQLGCNQATVRKKTVTCIASLASSLSDDLLAKATV 212

Query: 181 EVVQLLKNRSAKSEIARTNIQMIGALSRSVGYRFGPHLAEVVPLLINYCTSASENDEELC 240
           EVV+ L NR+AKSEI RTNIQMIGAL R+VGYRFG HL   VP+LINYCTSASENDEEL 
Sbjct: 213 EVVKNLSNRNAKSEITRTNIQMIGALCRAVGYRFGTHLGNTVPVLINYCTSASENDEELR 272

Query: 241 EYSLQALESFMLRCPRDISPYCESILNLALEYISYDPNFTDSM 283
           EYSLQALESF+LRCPRDISPYC+ ILNL LEYISYDPNFTD+M
Sbjct: 273 EYSLQALESFLLRCPRDISPYCDEILNLTLEYISYDPNFTDNM 315



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,317,698
Number of extensions: 183392
Number of successful extensions: 457
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 216
Effective length of database: 8,419,801
Effective search space: 1818677016
Effective search space used: 1818677016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)