FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0168500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0266) R2 : 0.00366
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0724 (0.056) R2dN8 : 0.00472 R2N8 : 0.00366
σ : 0.501
deviance : 115.04
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.48 0.449 10.4 1.14 0.422 -0.953 -0.0321 9.25 -0.0627 6.24 30 4384 -- --
100.02 0.469 10.6 -0.421 0.47 0.091 0.0251 -- -0.124 5.92 30 4384 -- --
91.48 0.445 10.4 1.14 0.422 -0.953 -- 9.25 -0.0626 6.25 30 4383 -- --
97.71 0.46 10.6 -0.47 0.456 0.248 -- -- -0.106 5.93 32.1 6140 -- --
100.68 0.467 10.5 1.18 -- -0.972 -- 9.65 -0.0703 -- 30.19 4440 -- --
100.28 0.469 10.6 -0.412 0.451 -- -0.00269 -- -0.127 6.06 -- -- -- --
100.28 0.469 10.6 -0.412 0.451 -- -- -- -0.127 6.06 -- -- -- --
107.7 0.483 10.6 -0.475 -- 0.254 -- -- -0.0953 -- 32 5756 -- --
103.46 0.474 10.6 -- 0.456 0.181 -- -- -0.0583 6.06 31.9 6120 -- --
110.85 0.492 10.6 -0.399 -- -- -- -- -0.117 -- -- -- -- --
104.75 0.479 10.6 -- 0.445 -- -- -- -0.081 6.11 -- -- -- --
112.86 0.495 10.6 -- -- -0.228 -- -- -0.0171 -- 27.79 47500 -- --
115.04 0.501 10.6 -- -- -- -- -- -0.0724 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.36 wind 1.0 1440 < th dose dependent rect. 17 1
2 77.38 wind 1.0 1440 < th dose independent rect. 17 1
3 77.39 wind 1.0 1440 > th dose independent rect. 17 1
4 78.06 precipitation 0.1 1440 > th dose independent rect. 12 1
6 78.06 precipitation 0.1 1440 > th dose dependent rect. 12 1
10 79.41 radiation 10.0 90 < th dose dependent rect. 11 1
13 83.20 radiation 10.0 90 < th dose independent rect. 11 1
28 88.44 radiation 10.0 4320 < th dose dependent rect. 11 1
29 88.68 temperature 30.0 4320 > th dose independent rect. 13 1
30 88.79 wind 9.0 14400 > th dose independent rect. 1 1
32 88.79 wind 9.0 14400 > th dose dependent rect. 1 1
38 89.08 temperature 30.0 4320 < th dose independent rect. 13 1
39 89.18 temperature 30.0 4320 > th dose independent rect. 12 3
46 89.93 wind 3.0 10 < th dose independent rect. 12 1
78 90.88 wind 3.0 10 < th dose dependent rect. 12 1
80 90.89 temperature 30.0 4320 > th dose independent rect. 16 1
84 90.91 temperature 30.0 4320 < th dose independent rect. 12 9
85 90.91 temperature 30.0 4320 < th dose independent rect. 12 11
87 90.91 temperature 30.0 4320 < th dose independent rect. 12 20
91 90.92 temperature 30.0 4320 < th dose independent rect. 12 15
92 90.92 temperature 30.0 4320 < th dose independent rect. 12 18
150 91.28 temperature 30.0 4320 < th dose independent rect. 16 1
178 91.48 temperature 25.0 30 > th dose independent rect. 11 1
179 91.51 temperature 30.0 4320 > th dose independent sin 16 NA
194 91.69 temperature 30.0 4320 < th dose independent sin 16 NA
238 91.88 temperature 30.0 4320 > th dose independent rect. 16 23
259 91.90 temperature 30.0 4320 < th dose independent rect. 16 23
284 92.07 temperature 30.0 4320 < th dose independent rect. 5 10
286 92.07 temperature 30.0 4320 < th dose independent rect. 2 13
287 92.07 temperature 30.0 4320 < th dose independent rect. 4 13
288 92.07 temperature 30.0 4320 < th dose independent rect. 2 15
298 92.08 temperature 30.0 4320 < th dose independent rect. 22 17
299 92.08 temperature 30.0 4320 < th dose independent rect. 20 19
300 92.08 temperature 30.0 4320 < th dose independent rect. 22 19
301 92.08 temperature 30.0 4320 < th dose independent rect. 20 21
346 92.16 temperature 30.0 4320 > th dose independent no NA NA
472 92.24 temperature 30.0 4320 < th dose independent rect. 4 17
473 92.24 temperature 30.0 4320 < th dose independent rect. 6 17
475 92.24 temperature 30.0 4320 < th dose independent rect. 2 19
520 92.25 temperature 30.0 4320 < th dose independent rect. 22 23
522 92.26 temperature 30.0 4320 < th dose independent no NA NA
585 92.39 temperature 25.0 4320 > th dose independent rect. 20 5
609 92.50 temperature 25.0 4320 > th dose independent rect. 22 2
632 92.60 radiation 10.0 270 < th dose independent rect. 8 1
677 92.88 wind 1.0 30 > th dose independent rect. 11 1
679 92.88 precipitation 0.1 30 < th dose independent rect. 12 23
681 92.88 temperature 25.0 4320 > th dose dependent rect. 20 3
683 92.88 precipitation 0.1 30 < th dose dependent rect. 12 23
684 92.89 radiation 1.0 30 > th dose independent rect. 11 1
691 92.92 temperature 25.0 4320 < th dose independent rect. 21 4
693 92.93 temperature 10.0 1440 > th dose independent rect. 12 1
697 92.93 atmosphere 995.0 1440 > th dose independent rect. 12 1
699 92.93 temperature 10.0 1440 > th dose independent rect. 13 23
702 92.93 temperature 25.0 4320 > th dose dependent rect. 22 1
707 92.96 wind 9.0 30 < th dose independent rect. 11 1
711 92.99 temperature 10.0 30 > th dose independent rect. 11 1
713 92.99 atmosphere 995.0 30 > th dose independent rect. 11 1
714 92.99 atmosphere 1015.0 30 < th dose independent rect. 11 1
715 92.99 precipitation 0.1 30 < th dose independent rect. 11 1
716 92.99 temperature 10.0 30 > th dose independent rect. 12 23
717 92.99 precipitation 0.1 30 < th dose dependent rect. 11 1
719 92.99 temperature 10.0 30 > th dose dependent rect. 12 23
724 93.04 temperature 30.0 4320 < th dose independent rect. 16 7
725 93.05 humidity 50.0 30 > th dose independent rect. 11 1
729 93.06 temperature 25.0 4320 > th dose dependent rect. 20 1
732 93.07 temperature 30.0 4320 < th dose independent rect. 16 5
734 93.07 temperature 30.0 4320 < th dose independent rect. 16 16
759 93.10 temperature 30.0 4320 < th dose independent rect. 16 11
779 93.16 temperature 25.0 4320 < th dose independent rect. 22 1
781 93.17 temperature 10.0 10 > th dose dependent rect. 11 1
791 93.20 atmosphere 995.0 30 > th dose independent rect. 12 23
804 93.24 wind 9.0 30 < th dose independent rect. 12 23
854 93.41 atmosphere 995.0 30 > th dose dependent rect. 11 1
899 93.56 atmosphere 1015.0 30 < th dose independent rect. 12 23
908 93.61 wind 1.0 30 > th dose independent rect. 12 23
935 93.73 temperature 30.0 30 < th dose independent rect. 11 1
955 93.79 humidity 50.0 30 > th dose independent rect. 12 23
967 93.83 atmosphere 995.0 30 > th dose dependent rect. 11 16
977 93.88 atmosphere 1005.0 30 > th dose independent rect. 11 1
1000 94.00 wind 9.0 30 < th dose dependent rect. 11 1