BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0168500 Os02g0168500|AK073486
         (441 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05320.1  | chr3:1513558-1514895 REVERSE LENGTH=446            477   e-135

>AT3G05320.1 | chr3:1513558-1514895 REVERSE LENGTH=446
          Length = 445

 Score =  477 bits (1227), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/387 (60%), Positives = 292/387 (75%), Gaps = 15/387 (3%)

Query: 62  GIRRGKFIEVPQIIWGLNNQKIAFARACLTARFLNRSLLMPSLSASLFYKEVDLLRPITF 121
           GIR  KF+EVPQI+WGLNNQKIAFARACLTAR +NR+LLMPSLSASLFYKEVD LRPI F
Sbjct: 63  GIRTDKFLEVPQIVWGLNNQKIAFARACLTARMMNRTLLMPSLSASLFYKEVDKLRPIPF 122

Query: 122 DKVFDFTKFNARCQGFVRLARYSEVSNQTKPFKLQKGSGRRWTVEKDLDQLLQYRRGEA- 180
           DKVF F +FN+ C GFVRL+R+S+V N+ + F L+KGSGRRWTVE+DL+ L Q  R E+ 
Sbjct: 123 DKVFQFERFNSLCSGFVRLSRFSDVKNRAQVFDLEKGSGRRWTVERDLEHLKQSARNESI 182

Query: 181 DDSEVIEIIGKHPFLWPDHWPVKDYARIFDCLALVPEIETEVVKAISKIREAGIKARHEA 240
           D+ EVI +IGK+PFLW DHWPV+DYA++F+C+ +V EI  E  K + KIREAG   R   
Sbjct: 183 DEFEVIRLIGKNPFLWHDHWPVEDYAKVFECMVVVDEISREADKVVMKIREAGEAERA-- 240

Query: 241 GISHNKHVKDGTMNPPVPYIAVHMRIEKDWMIHCKKWEQRSNSKEICSSKEEIIHKVSQI 300
                K      +  PVP++AVHMRIE DWMIHCKK EQR    EICSSK EI+ +V  I
Sbjct: 241 -----KLASKTEILGPVPFVAVHMRIEIDWMIHCKKLEQRKKISEICSSKREILDRVGNI 295

Query: 301 TDLRRPVVVYLAVADSLL----EDDSITSGWRVGMVAFEKKRLGVT-DIYNRQPYLIKSA 355
           + L+ P V+YLAVAD+LL    ED S+ SGWR G++ FEKK+LGV  +IY +  YLI+SA
Sbjct: 296 SGLKTPTVLYLAVADTLLEEKEEDSSVLSGWRDGLIPFEKKKLGVKEEIYGKYSYLIQSA 355

Query: 356 IDFEVCARADVFVGNSFSTFSNLVVLSRTQRLYNMGEASSCGENVG-LSSYAYNVIGDDG 414
           ID+EVC RADVFVGNSFSTFS+L+VL RTQ+   +G  SSC +      SYAYN+ G+  
Sbjct: 356 IDYEVCLRADVFVGNSFSTFSSLIVLERTQKARRLGFMSSCKDGGNKWRSYAYNLAGESN 415

Query: 415 G-PQRWMTDMSDTSLQNLSYGTNNISC 440
           G P+RWMT+M+ +SLQ +SYG+N++SC
Sbjct: 416 GVPRRWMTNMTHSSLQAISYGSNSVSC 442



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,757,346
Number of extensions: 402112
Number of successful extensions: 973
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,310,137
Effective search space: 2817136443
Effective search space used: 2817136443
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)