BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0168500 Os02g0168500|AK073486
         (441 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0168500  Conserved hypothetical protein                      892   0.0  

>Os02g0168500 Conserved hypothetical protein
          Length = 441

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/441 (97%), Positives = 429/441 (97%)

Query: 1   MNIILELNHLKQVSLPTRPVVCKGLFXXXXXXXXXXXXSPFLAVNPSEKEGFYDPTADLL 60
           MNIILELNHLKQVSLPTRPVVCKGLF            SPFLAVNPSEKEGFYDPTADLL
Sbjct: 1   MNIILELNHLKQVSLPTRPVVCKGLFIVIALIVLRAIVSPFLAVNPSEKEGFYDPTADLL 60

Query: 61  PGIRRGKFIEVPQIIWGLNNQKIAFARACLTARFLNRSLLMPSLSASLFYKEVDLLRPIT 120
           PGIRRGKFIEVPQIIWGLNNQKIAFARACLTARFLNRSLLMPSLSASLFYKEVDLLRPIT
Sbjct: 61  PGIRRGKFIEVPQIIWGLNNQKIAFARACLTARFLNRSLLMPSLSASLFYKEVDLLRPIT 120

Query: 121 FDKVFDFTKFNARCQGFVRLARYSEVSNQTKPFKLQKGSGRRWTVEKDLDQLLQYRRGEA 180
           FDKVFDFTKFNARCQGFVRLARYSEVSNQTKPFKLQKGSGRRWTVEKDLDQLLQYRRGEA
Sbjct: 121 FDKVFDFTKFNARCQGFVRLARYSEVSNQTKPFKLQKGSGRRWTVEKDLDQLLQYRRGEA 180

Query: 181 DDSEVIEIIGKHPFLWPDHWPVKDYARIFDCLALVPEIETEVVKAISKIREAGIKARHEA 240
           DDSEVIEIIGKHPFLWPDHWPVKDYARIFDCLALVPEIETEVVKAISKIREAGIKARHEA
Sbjct: 181 DDSEVIEIIGKHPFLWPDHWPVKDYARIFDCLALVPEIETEVVKAISKIREAGIKARHEA 240

Query: 241 GISHNKHVKDGTMNPPVPYIAVHMRIEKDWMIHCKKWEQRSNSKEICSSKEEIIHKVSQI 300
           GISHNKHVKDGTMNPPVPYIAVHMRIEKDWMIHCKKWEQRSNSKEICSSKEEIIHKVSQI
Sbjct: 241 GISHNKHVKDGTMNPPVPYIAVHMRIEKDWMIHCKKWEQRSNSKEICSSKEEIIHKVSQI 300

Query: 301 TDLRRPVVVYLAVADSLLEDDSITSGWRVGMVAFEKKRLGVTDIYNRQPYLIKSAIDFEV 360
           TDLRRPVVVYLAVADSLLEDDSITSGWRVGMVAFEKKRLGVTDIYNRQPYLIKSAIDFEV
Sbjct: 301 TDLRRPVVVYLAVADSLLEDDSITSGWRVGMVAFEKKRLGVTDIYNRQPYLIKSAIDFEV 360

Query: 361 CARADVFVGNSFSTFSNLVVLSRTQRLYNMGEASSCGENVGLSSYAYNVIGDDGGPQRWM 420
           CARADVFVGNSFSTFSNLVVLSRTQRLYNMGEASSCGENVGLSSYAYNVIGDDGGPQRWM
Sbjct: 361 CARADVFVGNSFSTFSNLVVLSRTQRLYNMGEASSCGENVGLSSYAYNVIGDDGGPQRWM 420

Query: 421 TDMSDTSLQNLSYGTNNISCH 441
           TDMSDTSLQNLSYGTNNISCH
Sbjct: 421 TDMSDTSLQNLSYGTNNISCH 441



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,834,646
Number of extensions: 594151
Number of successful extensions: 1264
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1264
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 337
Effective length of database: 11,605,545
Effective search space: 3911068665
Effective search space used: 3911068665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)