Os02g0138200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os02g0138200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.83 | 0.209 | 10.2 | -0.28 | 0.201 | -0.457 | -0.722 | 0.807 | -0.122 | 6.27 | 1001 | 12338 | -- | -- |
| 19.99 | 0.208 | 10.2 | -0.327 | 0.192 | -0.338 | -0.728 | -- | -0.132 | 6.29 | 1002 | 12920 | -- | -- |
| 21.07 | 0.214 | 10.2 | -0.285 | 0.198 | -0.471 | -- | 0.887 | -0.119 | 6.79 | 1001 | 12339 | -- | -- |
| 21.22 | 0.215 | 10.2 | -0.335 | 0.201 | -0.329 | -- | -- | -0.13 | 6.86 | 1002 | 13011 | -- | -- |
| 23.14 | 0.224 | 10.2 | -0.285 | -- | -0.456 | -- | 0.788 | -0.116 | -- | 1001 | 12231 | -- | -- |
| 22.5 | 0.222 | 10.2 | -0.379 | 0.204 | -- | -0.719 | -- | -0.0737 | 6.14 | -- | -- | -- | -- |
| 23.72 | 0.228 | 10.2 | -0.386 | 0.202 | -- | -- | -- | -0.0707 | 6.65 | -- | -- | -- | -- |
| 23.22 | 0.224 | 10.2 | -0.323 | -- | -0.333 | -- | -- | -0.118 | -- | 1002 | 13420 | -- | -- |
| 24.16 | 0.229 | 10.2 | -- | 0.174 | -0.395 | -- | -- | -0.123 | 7.18 | 1002 | 13138 | -- | -- |
| 25.86 | 0.238 | 10.2 | -0.381 | -- | -- | -- | -- | -0.0666 | -- | -- | -- | -- | -- |
| 27.65 | 0.246 | 10.1 | -- | 0.198 | -- | -- | -- | -0.0277 | 6.76 | -- | -- | -- | -- |
| 26.01 | 0.238 | 10.2 | -- | -- | -0.383 | -- | -- | -0.0962 | -- | 1002 | 13327 | -- | -- |
| 29.69 | 0.254 | 10.2 | -- | -- | -- | -- | -- | -0.0244 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.17 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 6 | 20 |
| 3 | 19.22 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 19 |
| 12 | 19.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 11 |
| 14 | 19.38 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 15 |
| 17 | 19.41 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 15 |
| 19 | 19.43 | temperature | 15.0 | 10 | > th | dose dependent | sin | 17 | NA |
| 28 | 19.48 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 21 |
| 33 | 19.50 | temperature | 25.0 | 10 | < th | dose dependent | sin | 19 | NA |
| 43 | 19.54 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 92 | 19.65 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 102 | 19.68 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 110 | 19.69 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 116 | 19.69 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 178 | 19.76 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 203 | 19.78 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 218 | 19.79 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 231 | 19.80 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 317 | 19.85 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 329 | 19.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 369 | 19.87 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 390 | 19.88 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 12 |
| 435 | 19.90 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 442 | 19.91 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 445 | 19.91 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 505 | 19.94 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 553 | 19.96 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 580 | 19.96 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 586 | 19.97 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 613 | 19.98 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 614 | 19.98 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 633 | 19.98 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 635 | 19.98 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 11 | 11 |
| 640 | 19.98 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 23 | 13 |
| 660 | 19.98 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 676 | 19.99 | atmosphere | 1000.0 | 14400 | < th | dose dependent | sin | 19 | NA |
| 679 | 19.99 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 685 | 19.99 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 700 | 19.99 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 731 | 20.00 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 23 |
| 732 | 20.00 | atmosphere | 1000.0 | 14400 | < th | dose dependent | sin | 17 | NA |
| 858 | 20.02 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 860 | 20.02 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 866 | 20.02 | temperature | 30.0 | 720 | < th | dose independent | rect. | 20 | 15 |
| 874 | 20.02 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 960 | 20.03 | atmosphere | 1000.0 | 14400 | < th | dose dependent | no | NA | NA |
| 961 | 20.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 963 | 20.03 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 2 |