BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0138200 Os02g0138200|AK064810
(552 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0138200 RNA-binding region RNP-1 (RNA recognition moti... 1014 0.0
>Os02g0138200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 552
Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/536 (92%), Positives = 497/536 (92%)
Query: 17 RIFVGGISEGVAAADLEAMFASVGRVAGVEFVRTNGRSFAYVDFHCPSDKALAKLFSTYN 76
RIFVGGISEGVAAADLEAMFASVGRVAGVEFVRTNGRSFAYVDFHCPSDKALAKLFSTYN
Sbjct: 17 RIFVGGISEGVAAADLEAMFASVGRVAGVEFVRTNGRSFAYVDFHCPSDKALAKLFSTYN 76
Query: 77 GCKWKGGKLRLEKAKEHYLTRLKRXXXXXXXXXXXMPASADVESKKEKLELNKAVLDSTK 136
GCKWKGGKLRLEKAKEHYLTRLKR MPASADVESKKEKLELNKAVLDSTK
Sbjct: 77 GCKWKGGKLRLEKAKEHYLTRLKREWEQEAAAAQEMPASADVESKKEKLELNKAVLDSTK 136
Query: 137 INIYFPKLRKVKALPFKGTGKHKYSFRHIEVPSYPIHFCDCEEHCGPPEAANDEYASVLD 196
INIYFPKLRKVKALPFKGTGKHKYSFRHIEVPSYPIHFCDCEEHCGPPEAANDEYASVLD
Sbjct: 137 INIYFPKLRKVKALPFKGTGKHKYSFRHIEVPSYPIHFCDCEEHCGPPEAANDEYASVLD 196
Query: 197 AAAYEKERSIMNSVMSKLFEKENDHLDSMEIQNHGVDFDAAEPSNARNELQMDKREETSE 256
AAAYEKERSIMNSVMSKLFEKENDHLDSMEIQNHGVDFDAAEPSNARNELQMDKREETSE
Sbjct: 197 AAAYEKERSIMNSVMSKLFEKENDHLDSMEIQNHGVDFDAAEPSNARNELQMDKREETSE 256
Query: 257 EDLDDQMXXXXXXXXXXXXXXXXNIVTCKPKSSVAQLNSEKQAADKDSRFRKRQQFEESS 316
EDLDDQM NIVTCKPKSSVAQLNSEKQAADKDSRFRKRQQFEESS
Sbjct: 257 EDLDDQMEETEDPSEEELDDLVLNIVTCKPKSSVAQLNSEKQAADKDSRFRKRQQFEESS 316
Query: 317 LQKRHKSSDFSETRNRKQSFPAISGAIQNEQKSSDLSGKGTHEFSSELDGDKSSASVQDV 376
LQKRHKSSDFSETRNRKQSFPAISGAIQNEQKSSDLSGKGTHEFSSELDGDKSSASVQDV
Sbjct: 317 LQKRHKSSDFSETRNRKQSFPAISGAIQNEQKSSDLSGKGTHEFSSELDGDKSSASVQDV 376
Query: 377 EALADSSTRNGSEQNSLASEPKRVSLWTQKSAWRDLVGGMGSASFSLSQILPNTNPAPPK 436
EALADSSTRNGSEQNSLASEPKRVSLWTQKSAWRDLVGGMGSASFSLSQILPNTNPAPPK
Sbjct: 377 EALADSSTRNGSEQNSLASEPKRVSLWTQKSAWRDLVGGMGSASFSLSQILPNTNPAPPK 436
Query: 437 VSNATEASASHAESRTKVKPSGKSLKPSEAATQLLPEQKMPTSSMAMLSSXXXXXXXXXX 496
VSNATEASASHAESRTKVKPSGKSLKPSEAATQLLPEQKMPTSSMAMLSS
Sbjct: 437 VSNATEASASHAESRTKVKPSGKSLKPSEAATQLLPEQKMPTSSMAMLSSERKENNKLEK 496
Query: 497 XXVVPKITIGEVCPFMRNSESEKQWSKAKKVLTGFIKKGNESTGSNVGKGKPSTRR 552
VVPKITIGEVCPFMRNSESEKQWSKAKKVLTGFIKKGNESTGSNVGKGKPSTRR
Sbjct: 497 ERVVPKITIGEVCPFMRNSESEKQWSKAKKVLTGFIKKGNESTGSNVGKGKPSTRR 552
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.125 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,387,249
Number of extensions: 628888
Number of successful extensions: 2070
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2068
Number of HSP's successfully gapped: 2
Length of query: 552
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 446
Effective length of database: 11,501,117
Effective search space: 5129498182
Effective search space used: 5129498182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)