BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0138200 Os02g0138200|AK064810
         (552 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58130.1  | chr5:23521190-23523766 REVERSE LENGTH=749          197   2e-50

>AT5G58130.1 | chr5:23521190-23523766 REVERSE LENGTH=749
          Length = 748

 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/208 (48%), Positives = 124/208 (59%), Gaps = 18/208 (8%)

Query: 17  RIFVGGISEGVAAADLEAMFASVGRVAGVEFVRTNGRSFAYVDFHCPSDKALAKLFSTYN 76
           R+ VGG+ E V   DL  +F+ +G V  VEFVRT GRSFAY+DF   S  +L KLFSTYN
Sbjct: 11  RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYN 70

Query: 77  GCKWKGGKLRLEKAKEHYLTRLKRX-XXXXXXXXXXMPASADVESKKEKLELNKAVLDST 135
           GC WKGG+LRLEKAKEHYL RLKR            + A +D                +T
Sbjct: 71  GCVWKGGRLRLEKAKEHYLARLKREWEAASSTSDNTIKAPSDSPP-------------AT 117

Query: 136 KINIYFPKLRKVKALPFKGTGKHKYSFRHIEV-PSYPIHFCDCEEHCG---PPEAANDEY 191
            +NI+FP+LRKVK +P  GTGKHKYSF+ + V  S P  FCDCEEH      P   +   
Sbjct: 118 HLNIFFPRLRKVKPMPLSGTGKHKYSFQRVPVSSSLPRSFCDCEEHSNSSLTPREIHLHD 177

Query: 192 ASVLDAAAYEKERSIMNSVMSKLFEKEN 219
              ++    E E ++MNSVM+KLFEK N
Sbjct: 178 LEAVNVGRQEAEVNVMNSVMNKLFEKNN 205



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.125    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,684,348
Number of extensions: 419716
Number of successful extensions: 1440
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1441
Number of HSP's successfully gapped: 3
Length of query: 552
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 448
Effective length of database: 8,255,305
Effective search space: 3698376640
Effective search space used: 3698376640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)