Os02g0130100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SNO glutamine amidotransferase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0130100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : SNO glutamine amidotransferase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.43 | 0.368 | 13.3 | -1.79 | 1.85 | -0.877 | 1.15 | -0.32 | -0.86 | 8.42 | 19.9 | 1407 | -- | -- |
| 61.44 | 0.365 | 13.2 | -1.69 | 1.83 | -0.818 | 1.25 | -- | -0.83 | 8.41 | 19.61 | 2686 | -- | -- |
| 65.53 | 0.377 | 13.2 | -1.74 | 1.85 | -0.883 | -- | -0.276 | -0.852 | 8.45 | 19.92 | 1480 | -- | -- |
| 65.61 | 0.377 | 13.2 | -1.72 | 1.84 | -0.813 | -- | -- | -0.844 | 8.45 | 20.1 | 1478 | -- | -- |
| 236.91 | 0.717 | 13.3 | -1.58 | -- | -0.995 | -- | 0.404 | -0.749 | -- | 25.1 | 2096 | -- | -- |
| 73.91 | 0.403 | 13.3 | -2.08 | 1.85 | -- | 1.22 | -- | -1.01 | 8.47 | -- | -- | -- | -- |
| 78.64 | 0.415 | 13.3 | -2.04 | 1.85 | -- | -- | -- | -1.01 | 8.49 | -- | -- | -- | -- |
| 177.03 | 0.62 | 13.2 | -1.63 | -- | -1.35 | -- | -- | -0.625 | -- | 26.29 | 591 | -- | -- |
| 79.15 | 0.414 | 13.1 | -- | 1.84 | -1.69 | -- | -- | -0.4 | 8.44 | 18 | 47520 | -- | -- |
| 269.09 | 0.767 | 13.3 | -2.03 | -- | -- | -- | -- | -0.994 | -- | -- | -- | -- | -- |
| 188.33 | 0.642 | 13.2 | -- | 1.84 | -- | -- | -- | -0.785 | 8.57 | -- | -- | -- | -- |
| 244.16 | 0.728 | 13.2 | -- | -- | -1.6 | -- | -- | -0.364 | -- | 26 | 613 | -- | -- |
| 377.99 | 0.907 | 13.3 | -- | -- | -- | -- | -- | -0.769 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.37 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 3 | 60.40 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 30 | 60.58 | temperature | 20.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 32 | 60.59 | temperature | 20.0 | 1440 | > th | dose independent | sin | 8 | NA |
| 53 | 60.66 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 86 | 60.73 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 114 | 60.82 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 196 | 61.01 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 253 | 61.13 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 267 | 61.15 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 12 | 20 |
| 270 | 61.16 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 358 | 61.29 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 374 | 61.33 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 421 | 61.40 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 475 | 61.50 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 476 | 61.50 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 508 | 61.60 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 509 | 61.60 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 655 | 61.99 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 666 | 62.03 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 690 | 62.11 | temperature | 20.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 764 | 62.27 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 800 | 62.36 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 820 | 62.42 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 5 |
| 902 | 62.56 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |