BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0130100 Os02g0130100|AK121866
         (255 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0130100  SNO glutamine amidotransferase family protein       501   e-142
AK119945                                                          140   1e-33

>Os02g0130100 SNO glutamine amidotransferase family protein
          Length = 255

 Score =  501 bits (1289), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/255 (96%), Positives = 246/255 (96%)

Query: 1   MAVVGVLALQGSFNEHLAALRRIGVRGVEVRKPEQLQGLDSLIIPGGESTTMAKLANYHN 60
           MAVVGVLALQGSFNEHLAALRRIGVRGVEVRKPEQLQGLDSLIIPGGESTTMAKLANYHN
Sbjct: 1   MAVVGVLALQGSFNEHLAALRRIGVRGVEVRKPEQLQGLDSLIIPGGESTTMAKLANYHN 60

Query: 61  LFPALREFVGTGRPVWGTCAGLIFLANKAVGQKSGGQELIGGLDCTVHRNFFGSQLQSFE 120
           LFPALREFVGTGRPVWGTCAGLIFLANKAVGQKSGGQELIGGLDCTVHRNFFGSQLQSFE
Sbjct: 61  LFPALREFVGTGRPVWGTCAGLIFLANKAVGQKSGGQELIGGLDCTVHRNFFGSQLQSFE 120

Query: 121 TELSVPMLAEKEGGSDTCRGVFIRAPAILDVGSNVEVLADCPVPSDRPSITIASGEGVEE 180
           TELSVPMLAEKEGGSDTCRGVFIRAPAILDVGSNVEVLADCPVPSDRPSITIASGEGVEE
Sbjct: 121 TELSVPMLAEKEGGSDTCRGVFIRAPAILDVGSNVEVLADCPVPSDRPSITIASGEGVEE 180

Query: 181 EVYSKDRVIVAVRQGNILATAFHPELTSDSRWHRFFLDMDKESDTKAFXXXXXXXXXRDT 240
           EVYSKDRVIVAVRQGNILATAFHPELTSDSRWHRFFLDMDKESDTKAF         RDT
Sbjct: 181 EVYSKDRVIVAVRQGNILATAFHPELTSDSRWHRFFLDMDKESDTKAFSALSLSSSSRDT 240

Query: 241 QDGSKNKPLDLPIFE 255
           QDGSKNKPLDLPIFE
Sbjct: 241 QDGSKNKPLDLPIFE 255



>AK119945 
          Length = 361

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 118/199 (59%), Gaps = 22/199 (11%)

Query: 4   VGVLALQGSFNEHLAALRRIG-------VRGVEVRKPEQLQGLDSLIIPGGESTTMAKLA 56
           VGVLA+QG+F EH + + R+        +R   VR PEQL   D+LIIPGGEST ++   
Sbjct: 36  VGVLAIQGAFREHASHINRLNTLYPLETIRSTLVRTPEQLGECDALIIPGGESTAISLGC 95

Query: 57  NYHNLFPALREFVGTGRPVWGTCAGLIFLANKAVGQKSGGQELIGGLDCTVHRNFFGSQL 116
               L   LR++V  GRPVWGTCAG+I LA +A G K GGQ+LIGG+D  V RN FG+Q+
Sbjct: 96  ERIGLLEPLRQWVRAGRPVWGTCAGMIMLAREASGGKKGGQQLIGGVDVRVGRNGFGTQV 155

Query: 117 QSFETELSVPMLAEKEGGSDTCRGVFIRAPAI--LDVGSNVEVLADCPVPSDRPSIT--- 171
            SFET L +  L ++   S+   GVFIRAP +  L + +++E      VP D+P++    
Sbjct: 156 DSFETGLEIHGLDKQ---SEPFNGVFIRAPVVDALLLPTDLEK-----VPVDQPTLVKRI 207

Query: 172 --IASGEGVEEEVYSKDRV 188
                 EGV   + + D V
Sbjct: 208 DPATLPEGVPAPLTTSDAV 226



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,738,754
Number of extensions: 387374
Number of successful extensions: 687
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 2
Length of query: 255
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 156
Effective length of database: 11,866,615
Effective search space: 1851191940
Effective search space used: 1851191940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)