BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0130100 Os02g0130100|AK121866
         (255 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60540.1  | chr5:24336874-24338647 REVERSE LENGTH=256          338   2e-93

>AT5G60540.1 | chr5:24336874-24338647 REVERSE LENGTH=256
          Length = 255

 Score =  338 bits (867), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 164/253 (64%), Positives = 200/253 (79%), Gaps = 1/253 (0%)

Query: 4   VGVLALQGSFNEHLAALRRIGVRGVEVRKPEQLQGLDSLIIPGGESTTMAKLANYHNLFP 63
           VGVLALQGSFNEH+AALRR+GV+GVE+RK +QL  + SLIIPGGESTTMAKLA YHNLFP
Sbjct: 3   VGVLALQGSFNEHIAALRRLGVQGVEIRKADQLLTVSSLIIPGGESTTMAKLAEYHNLFP 62

Query: 64  ALREFVGTGRPVWGTCAGLIFLANKAVGQKSGGQELIGGLDCTVHRNFFGSQLQSFETEL 123
           ALREFV  G+PVWGTCAGLIFLA++AVGQK GGQEL+GGLDCTVHRNFFGSQ+QSFE ++
Sbjct: 63  ALREFVKMGKPVWGTCAGLIFLADRAVGQKEGGQELVGGLDCTVHRNFFGSQIQSFEADI 122

Query: 124 SVPMLAEKEGGSDTCRGVFIRAPAILDVGSNVEVLADCPVPSDRPSITIASGEGVEEEVY 183
            VP L  +EGG +T RGVFIRAPA+LDVG +VEVLAD PVPS++   + ++ +  EE+  
Sbjct: 123 LVPQLTSQEGGPETYRGVFIRAPAVLDVGPDVEVLADYPVPSNKVLYSSSTVQIQEEDAL 182

Query: 184 SKDRVIVAVRQGNILATAFHPELTSDSRWHRFFLDMDKESDTKAFXXXXXXXXXR-DTQD 242
            + +VIVAV+QGN+LATAFHPELT+D+RWH +F+ M KE +  A            +T  
Sbjct: 183 PETKVIVAVKQGNLLATAFHPELTADTRWHSYFIKMTKEIEQGASSSSSKTIVSVGETSA 242

Query: 243 GSKNKPLDLPIFE 255
           G +    DLPIF+
Sbjct: 243 GPEPAKPDLPIFQ 255



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,369,110
Number of extensions: 228067
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 159
Effective length of database: 8,474,633
Effective search space: 1347466647
Effective search space used: 1347466647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)