Os02g0125800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor Tfb4 family protein.
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Os02g0125800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor Tfb4 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.78 | 0.181 | 8.57 | -0.46 | 0.332 | -0.694 | 0.0586 | -0.849 | 0.114 | 7.44 | 26.29 | 10 | -- | -- |
| 16 | 0.188 | 8.59 | -0.594 | 0.332 | -0.639 | 0.131 | -- | 0.085 | 7.52 | 26.85 | 15 | -- | -- |
| 14.71 | 0.18 | 8.57 | -0.453 | 0.328 | -0.692 | -- | -0.869 | 0.115 | 7.45 | 26.29 | 10 | -- | -- |
| 16.02 | 0.188 | 8.59 | -0.592 | 0.331 | -0.642 | -- | -- | 0.0837 | 7.5 | 26.7 | 12 | -- | -- |
| 20.11 | 0.21 | 8.58 | -0.458 | -- | -0.742 | -- | -0.919 | 0.124 | -- | 25.1 | 9 | -- | -- |
| 22.02 | 0.22 | 8.56 | -0.447 | 0.36 | -- | 0.183 | -- | 0.225 | 9.51 | -- | -- | -- | -- |
| 22.14 | 0.22 | 8.56 | -0.441 | 0.36 | -- | -- | -- | 0.225 | 9.47 | -- | -- | -- | -- |
| 21.62 | 0.217 | 8.6 | -0.589 | -- | -0.675 | -- | -- | 0.0968 | -- | 25.18 | 2 | -- | -- |
| 24.42 | 0.231 | 8.56 | -- | 0.328 | -0.417 | -- | -- | 0.193 | 8.34 | 26.7 | 10 | -- | -- |
| 29.75 | 0.255 | 8.57 | -0.443 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 27.26 | 0.244 | 8.55 | -- | 0.36 | -- | -- | -- | 0.274 | 9.56 | -- | -- | -- | -- |
| 30.27 | 0.256 | 8.58 | -- | -- | -0.482 | -- | -- | 0.186 | -- | 26 | 2 | -- | -- |
| 34.93 | 0.276 | 8.56 | -- | -- | -- | -- | -- | 0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.78 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 5 | 14.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 12 | 14.97 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 13 | 14.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 14 | 14.99 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 15 | 14.99 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 16 | 15.00 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 17 | 15.00 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 18 | 15.00 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 28 | 15.05 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 29 | 15.05 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 50 | 15.14 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 66 | 15.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 125 | 15.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 159 | 15.49 | temperature | 30 | 10 | < th | dose dependent | sin | 10 | NA |
| 161 | 15.50 | temperature | 15 | 10 | > th | dose dependent | sin | 10 | NA |
| 450 | 16.16 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 23 |
| 510 | 16.27 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 23 |
| 576 | 16.40 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 22 |
| 584 | 16.41 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 20 |
| 593 | 16.42 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 16 |
| 594 | 16.42 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 18 |
| 607 | 16.43 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 22 |
| 615 | 16.44 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 655 | 16.49 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 23 |
| 666 | 16.50 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 689 | 16.52 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 15 |
| 703 | 16.53 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 718 | 16.54 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 23 |
| 731 | 16.55 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 23 |
| 738 | 16.56 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 744 | 16.57 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 745 | 16.57 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 755 | 16.59 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 15 |
| 761 | 16.60 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 791 | 16.64 | temperature | 20 | 10 | > th | dose independent | sin | 12 | NA |
| 796 | 16.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 844 | 16.69 | temperature | 10 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 879 | 16.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 906 | 16.76 | temperature | 20 | 10 | < th | dose independent | sin | 11 | NA |