BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0125800 Os02g0125800|AK121932
         (289 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0125800  Transcription factor Tfb4 family protein            464   e-131

>Os02g0125800 Transcription factor Tfb4 family protein
          Length = 289

 Score =  464 bits (1194), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/289 (80%), Positives = 232/289 (80%)

Query: 1   MASSKLYXXXXXXXXXXXXTNPLFWATAALPFADFFAHLIXXXXXXXXXXXXXXXXXIAA 60
           MASSKLY            TNPLFWATAALPFADFFAHLI                 IAA
Sbjct: 1   MASSKLYSDDVSLAVVVVDTNPLFWATAALPFADFFAHLIHYVNSLLLLNHLNHVVVIAA 60

Query: 61  GLSSCTYIFXXXXXXXXXXXXXXXTFAKASRKMDEFIAEDARATSSNGSVADGNXXXXXX 120
           GLSSCTYIF               TFAKASRKMDEFIAEDARATSSNGSVADGN      
Sbjct: 61  GLSSCTYIFDSSDASASGAADVAATFAKASRKMDEFIAEDARATSSNGSVADGNAASLLS 120

Query: 121 XXXXXXXCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCIV 180
                  CYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCIV
Sbjct: 121 GALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCIV 180

Query: 181 GTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFRASC 240
           GTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFRASC
Sbjct: 181 GTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFRASC 240

Query: 241 FCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNRVMPDLNSVPDQRQ 289
           FCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNRVMPDLNSVPDQRQ
Sbjct: 241 FCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNRVMPDLNSVPDQRQ 289



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,586,415
Number of extensions: 257631
Number of successful extensions: 646
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 189
Effective length of database: 11,814,401
Effective search space: 2232921789
Effective search space used: 2232921789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)