BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0125800 Os02g0125800|AK121932
         (289 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18340.1  | chr1:6311612-6313734 REVERSE LENGTH=302            306   7e-84

>AT1G18340.1 | chr1:6311612-6313734 REVERSE LENGTH=302
          Length = 301

 Score =  306 bits (784), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 154/293 (52%), Positives = 188/293 (64%), Gaps = 7/293 (2%)

Query: 3   SSKLYXXXXXXXXXXXXTNPLFWATAALPFADFFAHLIXXXXXXXXXXXXXXXXXIAAGL 62
           +SK Y            TNPLFW+T ++ F+ F +H++                 IA G 
Sbjct: 5   ASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGY 64

Query: 63  SSCTYIFXXXXXXXXXXXXXXXT-----FAKASRKMDEFIAEDARATSSNGSVADGNXXX 117
           SSC YI+               T     F    +K++EF+ +D   +    S  D     
Sbjct: 65  SSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVS-EDRIPSC 123

Query: 118 XXXXXXXXXXCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDS 177
                     CYIQRVFRSG  HPQPRILCLQGSPDGPEQYVAVMNSIFSAQR MVPIDS
Sbjct: 124 LLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDS 183

Query: 178 CIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFR 237
           C +G Q+SAFLQQASYITGGV+  P++L+GLFQYL  +FATDLHSR F++LPK +GVDFR
Sbjct: 184 CYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFR 243

Query: 238 ASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNRV-MPDLNSVPDQRQ 289
           ASCFCHKKTIDMGY+CSVCLSIFC++HKKCSTCGS F +  + D +S  D+++
Sbjct: 244 ASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKR 296



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,899,347
Number of extensions: 170287
Number of successful extensions: 501
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 191
Effective length of database: 8,419,801
Effective search space: 1608181991
Effective search space used: 1608181991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)