Os02g0115700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Catalase isozyme A (EC 1.11.1.6) (CAT-A).
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Os02g0115700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Catalase isozyme A (EC 1.11.1.6) (CAT-A).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 258.41 | 0.755 | 14.4 | 1.43 | 3.39 | -4.15 | -0.126 | 8.62 | 0.347 | 17.3 | 25.75 | 599 | 20 | 4.18 |
| 261.02 | 0.752 | 14.4 | 0.737 | 3.37 | -2.83 | 0.0213 | -- | 0.354 | 17.3 | 25.44 | 598 | 20 | 3.54 |
| 258.31 | 0.749 | 14.4 | 1.42 | 3.39 | -4.25 | -- | 8.73 | 0.357 | 17.3 | 25.72 | 593 | 20 | 4.32 |
| 260.78 | 0.752 | 14.4 | 0.713 | 3.39 | -2.79 | -- | -- | 0.329 | 17.3 | 25.49 | 600 | 20 | 3.62 |
| 606.91 | 1.15 | 14.1 | 2.65 | -- | -5.38 | -- | 9.36 | 1.42 | -- | 23.3 | 732 | 20.1 | 4.42 |
| 424.37 | 0.966 | 14.4 | 0.363 | 4.32 | -- | 1.24 | -- | 0.317 | 17 | -- | -- | -- | -- |
| 428.3 | 0.969 | 14.4 | 0.366 | 4.33 | -- | -- | -- | 0.323 | 17 | -- | -- | -- | -- |
| 341.22 | 0.86 | 14.3 | 0.827 | -- | -5.3 | -- | -- | 0.68 | -- | 4.691 | 627 | 18.6 | 10.3 |
| 272.94 | 0.769 | 14.4 | -- | 3.4 | -2.72 | -- | -- | 0.245 | 17.3 | 25.54 | 591 | 20 | 3.57 |
| 1413.01 | 1.76 | 14.4 | 0.208 | -- | -- | -- | -- | 0.212 | -- | -- | -- | -- | -- |
| 431.84 | 0.972 | 14.4 | -- | 4.32 | -- | -- | -- | 0.283 | 17 | -- | -- | -- | -- |
| 355.85 | 0.879 | 14.3 | -- | -- | -5.15 | -- | -- | 0.537 | -- | 3.401 | 621 | 18.6 | 10.4 |
| 1414.15 | 1.76 | 14.4 | -- | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 275.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 3 | 276.35 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 5 | 278.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 45 | 297.24 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 50 | 298.94 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 54 | 299.29 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 58 | 299.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 69 | 302.30 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 97 | 303.99 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 150 | 307.79 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 157 | 308.71 | humidity | 80 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 197 | 311.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 211 | 311.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 219 | 312.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 222 | 312.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 223 | 312.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 237 | 313.46 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 267 | 314.20 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 282 | 314.21 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 340 | 314.65 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 363 | 315.05 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 387 | 315.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 443 | 315.61 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 454 | 315.73 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 472 | 315.88 | humidity | 70 | 1440 | < th | dose independent | sin | 12 | NA |
| 506 | 316.30 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 614 | 316.62 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 616 | 316.66 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 753 | 317.97 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 760 | 318.10 | humidity | 70 | 1440 | > th | dose independent | sin | 12 | NA |
| 786 | 318.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 804 | 318.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 806 | 318.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 809 | 318.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 810 | 318.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 818 | 319.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 821 | 319.06 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 828 | 319.19 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 851 | 319.29 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 919 | 319.52 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 944 | 319.58 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 993 | 320.02 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 999 | 320.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |