BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0115700 Os02g0115700|AK065094
(492 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35090.1 | chr4:16700937-16703215 REVERSE LENGTH=493 754 0.0
AT1G20630.1 | chr1:7146812-7149609 FORWARD LENGTH=493 753 0.0
AT1G20620.1 | chr1:7143142-7146193 FORWARD LENGTH=493 723 0.0
>AT4G35090.1 | chr4:16700937-16703215 REVERSE LENGTH=493
Length = 492
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/492 (69%), Positives = 420/492 (85%)
Query: 1 MDPCKFRPSSSFDTKTTTTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIP 60
MDP K+RP+SS+++ TTN+GAPVWN+N ++TVGPRGPILLEDYHL+EK+A+F RERIP
Sbjct: 1 MDPYKYRPASSYNSPFFTTNSGAPVWNNNSSMTVGPRGPILLEDYHLVEKLANFDRERIP 60
Query: 61 ERVVHARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPR 120
ERVVHARGASAKGFFE THD++++TCADFLR+PG QTPVIVRFSTVIHERGSPET+RDPR
Sbjct: 61 ERVVHARGASAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPR 120
Query: 121 GFAVKFYTREGNWDLLGNNFPVFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLSHHP 180
GFAVKFYTREGN+DL+GNNFPVFFIRDG+KFPD++HA KPNP+SH+QE WR+ DF SHHP
Sbjct: 121 GFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHP 180
Query: 181 ESLHTFFFLFDDVGIPTDYRHMDGFGVNTYTFVTRDAKARYVKFHWKPTCGVSCLMDDEA 240
ESL+ F FLFDD+GIP DYRHMDG GVNTY + + KA YVKFHWKPTCGV L++++A
Sbjct: 181 ESLNMFTFLFDDIGIPQDYRHMDGSGVNTYMLINKAGKAHYVKFHWKPTCGVKSLLEEDA 240
Query: 241 TLVGGKNHSHATQDLYDSIAAGNFPEWKLFVQVIXXXXXXXXXXXXXXXTKTWPEDEVPL 300
VGG NHSHATQDLYDSIAAGN+PEWKLF+Q+I TKTWPED +PL
Sbjct: 241 IRVGGTNHSHATQDLYDSIAAGNYPEWKLFIQIIDPADEDKFDFDPLDVTKTWPEDILPL 300
Query: 301 RPVGRLVLNRNVDNFFNENEQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNY 360
+PVGR+VLN+N+DNFF ENEQLAF P ++VPGI+YSDDK+LQ RVF+YADTQR+RLGPNY
Sbjct: 301 QPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGIHYSDDKLLQTRVFSYADTQRHRLGPNY 360
Query: 361 LMLPVNAPKCAHHNNHYDGAMNFMHRDEEVDYYPSRHAPLRHAPPTPITPRPVVGRRQKA 420
L LPVNAPKCAHHNNH++G MNFMHRDEEV+Y+PSR+ +RHA P P G+R++
Sbjct: 361 LQLPVNAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDQVRHAEKYPTPPAVCSGKRERC 420
Query: 421 TIHKQNDFKQPGERYRSWAPDRQERFIRRFAGELAHPKVSPELRAIWVNYLSQCDESLGV 480
I K+N+FK+PGERYR++ P+RQERFI+R+ L+ P+++ E+R+IW++Y SQ D+SLG
Sbjct: 421 IIEKENNFKEPGERYRTFTPERQERFIQRWIDALSDPRITHEIRSIWISYWSQADKSLGQ 480
Query: 481 KIANRLNVKPSM 492
K+A+RLNV+PS+
Sbjct: 481 KLASRLNVRPSI 492
>AT1G20630.1 | chr1:7146812-7149609 FORWARD LENGTH=493
Length = 492
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/492 (70%), Positives = 410/492 (83%)
Query: 1 MDPCKFRPSSSFDTKTTTTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIP 60
MDP + RPSS+ D+ TTN+GAPVWN+N +LTVG RGPILLEDYHL+EK+A+F RERIP
Sbjct: 1 MDPYRVRPSSAHDSPFFTTNSGAPVWNNNSSLTVGTRGPILLEDYHLLEKLANFDRERIP 60
Query: 61 ERVVHARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPR 120
ERVVHARGASAKGFFE THD+T +T ADFLR PG QTPVIVRFSTVIHERGSPET+RDPR
Sbjct: 61 ERVVHARGASAKGFFEVTHDITQLTSADFLRGPGVQTPVIVRFSTVIHERGSPETLRDPR 120
Query: 121 GFAVKFYTREGNWDLLGNNFPVFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLSHHP 180
GFAVKFYTREGN+DL+GNNFPVFF+RDG+KFPD++HA KPNP+SH+QE WR+ DF SHHP
Sbjct: 121 GFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHP 180
Query: 181 ESLHTFFFLFDDVGIPTDYRHMDGFGVNTYTFVTRDAKARYVKFHWKPTCGVSCLMDDEA 240
ESLH F FLFDD+GIP DYRHM+G GVNTY + + KA YVKFHWKPTCG+ CL D+EA
Sbjct: 181 ESLHMFSFLFDDLGIPQDYRHMEGAGVNTYMLINKAGKAHYVKFHWKPTCGIKCLSDEEA 240
Query: 241 TLVGGKNHSHATQDLYDSIAAGNFPEWKLFVQVIXXXXXXXXXXXXXXXTKTWPEDEVPL 300
VGG NHSHAT+DLYDSIAAGN+P+W LFVQV+ TK WPED +PL
Sbjct: 241 IRVGGANHSHATKDLYDSIAAGNYPQWNLFVQVMDPAHEDKFDFDPLDVTKIWPEDILPL 300
Query: 301 RPVGRLVLNRNVDNFFNENEQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNY 360
+PVGRLVLN+N+DNFFNENEQ+AF P LVVPGI+YSDDK+LQ R+F+YAD+QR+RLGPNY
Sbjct: 301 QPVGRLVLNKNIDNFFNENEQIAFCPALVVPGIHYSDDKLLQTRIFSYADSQRHRLGPNY 360
Query: 361 LMLPVNAPKCAHHNNHYDGAMNFMHRDEEVDYYPSRHAPLRHAPPTPITPRPVVGRRQKA 420
L LPVNAPKCAHHNNH+DG MNFMHRDEEV+Y+PSR P+RHA P TP G R+K
Sbjct: 361 LQLPVNAPKCAHHNNHHDGFMNFMHRDEEVNYFPSRLDPVRHAEKYPTTPIVCSGNREKC 420
Query: 421 TIHKQNDFKQPGERYRSWAPDRQERFIRRFAGELAHPKVSPELRAIWVNYLSQCDESLGV 480
I K+N+FKQPGERYRSW DRQERF++RF L+ P+V+ E+R+IW++Y SQ D+SLG
Sbjct: 421 FIGKENNFKQPGERYRSWDSDRQERFVKRFVEALSEPRVTHEIRSIWISYWSQADKSLGQ 480
Query: 481 KIANRLNVKPSM 492
K+A RLNV+P+
Sbjct: 481 KLATRLNVRPNF 492
>AT1G20620.1 | chr1:7143142-7146193 FORWARD LENGTH=493
Length = 492
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/492 (67%), Positives = 405/492 (82%)
Query: 1 MDPCKFRPSSSFDTKTTTTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIP 60
MDP K+RPSS+++ TTN GAPV N+ +LT+G RGP+LLEDYHLIEKVA+F RERIP
Sbjct: 1 MDPYKYRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDYHLIEKVANFTRERIP 60
Query: 61 ERVVHARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPR 120
ERVVHARG SAKGFFE THD++++TCADFLR+PG QTPVIVRFSTV+HER SPET+RD R
Sbjct: 61 ERVVHARGISAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVVHERASPETMRDIR 120
Query: 121 GFAVKFYTREGNWDLLGNNFPVFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLSHHP 180
GFAVKFYTREGN+DL+GNN PVFFIRDGI+FPDV+HA KPNP++++QEYWR+ D++SH P
Sbjct: 121 GFAVKFYTREGNFDLVGNNTPVFFIRDGIQFPDVVHALKPNPKTNIQEYWRILDYMSHLP 180
Query: 181 ESLHTFFFLFDDVGIPTDYRHMDGFGVNTYTFVTRDAKARYVKFHWKPTCGVSCLMDDEA 240
ESL T+ ++FDDVGIP DYRHM+GFGV+TYT + + K +VKFHWKPTCG+ L D+EA
Sbjct: 181 ESLLTWCWMFDDVGIPQDYRHMEGFGVHTYTLIAKSGKVLFVKFHWKPTCGIKNLTDEEA 240
Query: 241 TLVGGKNHSHATQDLYDSIAAGNFPEWKLFVQVIXXXXXXXXXXXXXXXTKTWPEDEVPL 300
+VGG NHSHAT+DL+D+IA+GN+PEWKLF+Q + TK WPED +PL
Sbjct: 241 KVVGGANHSHATKDLHDAIASGNYPEWKLFIQTMDPADEDKFDFDPLDVTKIWPEDILPL 300
Query: 301 RPVGRLVLNRNVDNFFNENEQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNY 360
+PVGRLVLNR +DNFFNE EQLAF PGLVVPGIYYSDDK+LQCR+FAY DTQR+RLGPNY
Sbjct: 301 QPVGRLVLNRTIDNFFNETEQLAFNPGLVVPGIYYSDDKLLQCRIFAYGDTQRHRLGPNY 360
Query: 361 LMLPVNAPKCAHHNNHYDGAMNFMHRDEEVDYYPSRHAPLRHAPPTPITPRPVVGRRQKA 420
L LPVNAPKCAHHNNH++G MNFMHRDEE++YYPS+ P+R A P G R K
Sbjct: 361 LQLPVNAPKCAHHNNHHEGFMNFMHRDEEINYYPSKFDPVRCAEKVPTPTNSYTGIRTKC 420
Query: 421 TIHKQNDFKQPGERYRSWAPDRQERFIRRFAGELAHPKVSPELRAIWVNYLSQCDESLGV 480
I K+N+FKQ G+RYRSWAPDRQ+RF++R+ L+ P+++ E+R IW++Y SQ D SLG
Sbjct: 421 VIKKENNFKQAGDRYRSWAPDRQDRFVKRWVEILSEPRLTHEIRGIWISYWSQADRSLGQ 480
Query: 481 KIANRLNVKPSM 492
K+A+RLNV+PS+
Sbjct: 481 KLASRLNVRPSI 492
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,920,112
Number of extensions: 540368
Number of successful extensions: 1064
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1064
Number of HSP's successfully gapped: 3
Length of query: 492
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 389
Effective length of database: 8,282,721
Effective search space: 3221978469
Effective search space used: 3221978469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)