Os02g0106800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TMPIT-like family protein.
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Os02g0106800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TMPIT-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.03 | 0.221 | 11.7 | -0.394 | 0.858 | 0.374 | 0.731 | 0.423 | 0.167 | 2.09 | 21.1 | 51 | -- | -- |
| 22.97 | 0.223 | 11.7 | -0.438 | 0.828 | 0.329 | 0.518 | -- | 0.144 | 2.09 | 21.37 | 92 | -- | -- |
| 23.45 | 0.226 | 11.7 | -0.483 | 0.843 | 0.353 | -- | 0.111 | 0.153 | 2.02 | 21.2 | 50 | -- | -- |
| 23.51 | 0.226 | 11.7 | -0.511 | 0.849 | 0.356 | -- | -- | 0.143 | 2.03 | 21.19 | 50 | -- | -- |
| 47.63 | 0.321 | 11.7 | -0.641 | -- | 0.637 | -- | -0.16 | -0.00699 | -- | 24.7 | 1024 | -- | -- |
| 28.94 | 0.252 | 11.7 | -0.403 | 0.743 | -- | 0.417 | -- | 0.228 | 2.21 | -- | -- | -- | -- |
| 29.58 | 0.255 | 11.7 | -0.414 | 0.743 | -- | -- | -- | 0.225 | 2.14 | -- | -- | -- | -- |
| 47.67 | 0.322 | 11.7 | -0.592 | -- | 0.628 | -- | -- | 0.00895 | -- | 24.71 | 1024 | -- | -- |
| 30.17 | 0.256 | 11.7 | -- | 0.827 | 0.272 | -- | -- | 0.2 | 2.04 | 21.18 | 50 | -- | -- |
| 62.58 | 0.37 | 11.7 | -0.383 | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
| 34.1 | 0.273 | 11.7 | -- | 0.735 | -- | -- | -- | 0.272 | 2.12 | -- | -- | -- | -- |
| 49.66 | 0.328 | 11.7 | -- | -- | -0.489 | -- | -- | 0.325 | -- | 28.17 | 144 | -- | -- |
| 66.46 | 0.381 | 11.7 | -- | -- | -- | -- | -- | 0.286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 5 | 21.43 | temperature | 10 | 30 | > th | dose dependent | sin | 9 | NA |
| 27 | 22.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 36 | 22.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 49 | 22.28 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 19 |
| 53 | 22.30 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 58 | 22.31 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 80 | 22.36 | temperature | 25 | 90 | < th | dose dependent | sin | 11 | NA |
| 203 | 22.77 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 10 |
| 229 | 22.83 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 232 | 22.85 | temperature | 25 | 720 | < th | dose independent | sin | 13 | NA |
| 235 | 22.85 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 13 |
| 240 | 22.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 241 | 22.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 242 | 22.87 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 247 | 22.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 250 | 22.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 254 | 22.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 266 | 22.88 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 279 | 22.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 283 | 22.92 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 8 |
| 285 | 22.92 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 370 | 23.01 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 409 | 23.05 | temperature | 25 | 90 | < th | dose independent | sin | 9 | NA |
| 644 | 23.33 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 648 | 23.34 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 11 |
| 696 | 23.41 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 5 |
| 712 | 23.42 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 744 | 23.49 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 17 |
| 781 | 23.53 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 13 |
| 786 | 23.54 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 15 |
| 795 | 23.54 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 17 |
| 799 | 23.55 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 13 |
| 838 | 23.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 13 |
| 855 | 23.61 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 17 |
| 922 | 23.67 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |