BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0106800 Os02g0106800|AK060675
(354 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0106800 TMPIT-like family protein 595 e-170
AK058577 107 1e-23
Os08g0152800 Conserved hypothetical protein 106 3e-23
>Os02g0106800 TMPIT-like family protein
Length = 354
Score = 595 bits (1534), Expect = e-170, Method: Compositional matrix adjust.
Identities = 290/300 (96%), Positives = 290/300 (96%)
Query: 55 QASLSTLAPTTLDKVEEELERARVTISDSDVAAFLPSKRNGKFLKTFVGPVNVRVARKED 114
QASLSTLAPTTLDKVEEELERARVTISDSDVAAFLPSKRNGKFLKTFVGPVNVRVARKED
Sbjct: 55 QASLSTLAPTTLDKVEEELERARVTISDSDVAAFLPSKRNGKFLKTFVGPVNVRVARKED 114
Query: 115 KLRVKDEYNNYRDRAAYMFXXXXXXXXXXRWWIWDGCLPALAVQMYQAWLLFLYTSFALR 174
KLRVKDEYNNYRDRAAYMF RWWIWDGCLPALAVQMYQAWLLFLYTSFALR
Sbjct: 115 KLRVKDEYNNYRDRAAYMFLLFPSILLLLRWWIWDGCLPALAVQMYQAWLLFLYTSFALR 174
Query: 175 ENVLIVNGSDIRPWWIYHHYLAMLMALVSLTWEIKGQPDCSSKQRGVQLFLRWAIMQGIA 234
ENVLIVNGSDIRPWWIYHHYLAMLMALVSLTWEIKGQPDCSSKQRGVQLFLRWAIMQGIA
Sbjct: 175 ENVLIVNGSDIRPWWIYHHYLAMLMALVSLTWEIKGQPDCSSKQRGVQLFLRWAIMQGIA 234
Query: 235 MHLQNRYQRQRLRTRIALGKAKRMDVVAGETAGVEGQLLLLYPVLFTLQVFEGYVGVLLL 294
MHLQNRYQRQRLRTRIALGKAKRMDVVAGETAGVEGQLLLLYPVLFTLQVFEGYVGVLLL
Sbjct: 235 MHLQNRYQRQRLRTRIALGKAKRMDVVAGETAGVEGQLLLLYPVLFTLQVFEGYVGVLLL 294
Query: 295 KTALHGLASEWQVVVCGILLVVMAVGNFVNTMETLMLKLRFKAKMKRAKSRQDLSRQHQN 354
KTALHGLASEWQVVVCGILLVVMAVGNFVNTMETLMLKLRFKAKMKRAKSRQDLSRQHQN
Sbjct: 295 KTALHGLASEWQVVVCGILLVVMAVGNFVNTMETLMLKLRFKAKMKRAKSRQDLSRQHQN 354
>AK058577
Length = 125
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 74/89 (83%), Gaps = 1/89 (1%)
Query: 259 DVVAGETAGVEGQLLLLYPVLFTLQVFEGYVGVLLLKTALHGLASEWQVVVCGILLVVMA 318
DVV GETAGVEGQLLLL PVLF LQ FEGYVG LLL+TA G+ EWQVVVCG+LL+ MA
Sbjct: 19 DVVWGETAGVEGQLLLLCPVLFLLQGFEGYVGFLLLRTAHTGIVPEWQVVVCGVLLIAMA 78
Query: 319 VGNFVNTMETLMLKLRFKAKMKRAKSRQD 347
+GNF NT++TLM K RFKAK KR++ ++D
Sbjct: 79 IGNFANTVDTLMAKSRFKAK-KRSRGKRD 106
>Os08g0152800 Conserved hypothetical protein
Length = 112
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 59/91 (64%), Gaps = 24/91 (26%)
Query: 189 WIYHHYLAMLMALVSLTWEIKGQPDCSSKQ------------------------RGVQLF 224
W+ HHY AMLM+L+SLTWEIKGQPDCS KQ RGV+LF
Sbjct: 13 WMCHHYCAMLMSLISLTWEIKGQPDCSRKQVCNFFSFHYILYIMNVHNLYTYSQRGVELF 72
Query: 225 LRWAIMQGIAMHLQNRYQRQRLRTRIALGKA 255
L WAIMQG AM LQNRYQRQRL TRIALGK
Sbjct: 73 LCWAIMQGFAMMLQNRYQRQRLYTRIALGKV 103
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,832,073
Number of extensions: 310961
Number of successful extensions: 885
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 884
Number of HSP's successfully gapped: 3
Length of query: 354
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 252
Effective length of database: 11,709,973
Effective search space: 2950913196
Effective search space used: 2950913196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)