Os02g0105100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0105100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.8 | 0.277 | 10.3 | 0.296 | 0.972 | -0.535 | -0.125 | -0.213 | 0.27 | 7.37 | 30.11 | 4240 | -- | -- |
| 34.75 | 0.275 | 10.3 | 0.265 | 0.971 | -0.558 | -0.121 | -- | 0.277 | 7.37 | 30.3 | 4241 | -- | -- |
| 34.79 | 0.275 | 10.3 | 0.292 | 0.972 | -0.533 | -- | -0.167 | 0.275 | 7.39 | 30.3 | 4240 | -- | -- |
| 34.79 | 0.275 | 10.3 | 0.263 | 0.971 | -0.557 | -- | -- | 0.277 | 7.37 | 30.3 | 4241 | -- | -- |
| 81.61 | 0.421 | 10.3 | 0.298 | -- | -0.488 | -- | -0.0198 | 0.252 | -- | 30.3 | 5761 | -- | -- |
| 45.47 | 0.316 | 10.3 | 0.402 | 0.977 | -- | -0.119 | -- | 0.177 | 7.21 | -- | -- | -- | -- |
| 45.51 | 0.316 | 10.3 | 0.399 | 0.977 | -- | -- | -- | 0.177 | 7.21 | -- | -- | -- | -- |
| 81.5 | 0.42 | 10.3 | 0.259 | -- | -0.513 | -- | -- | 0.263 | -- | 30.4 | 5739 | -- | -- |
| 36.54 | 0.282 | 10.3 | -- | 0.981 | -0.585 | -- | -- | 0.255 | 7.36 | 30.3 | 4240 | -- | -- |
| 95.99 | 0.458 | 10.3 | 0.417 | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
| 49.71 | 0.33 | 10.3 | -- | 0.981 | -- | -- | -- | 0.132 | 7.18 | -- | -- | -- | -- |
| 83.19 | 0.425 | 10.3 | -- | -- | -0.551 | -- | -- | 0.246 | -- | 30.3 | 5739 | -- | -- |
| 100.58 | 0.468 | 10.3 | -- | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.27 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 2 | 34.32 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 3 | 34.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 5 | 34.36 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 6 | 34.37 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 5 |
| 12 | 34.37 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 13 |
| 17 | 34.38 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 39 | 34.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 50 | 34.42 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 72 | 34.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 73 | 34.56 | temperature | 30 | 4320 | < th | dose independent | sin | 14 | NA |
| 74 | 34.58 | temperature | 30 | 4320 | > th | dose independent | sin | 14 | NA |
| 79 | 34.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 101 | 34.62 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 155 | 34.68 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 8 |
| 171 | 34.70 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 8 |
| 175 | 34.70 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 13 |
| 176 | 34.70 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 17 |
| 188 | 34.71 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 6 |
| 265 | 34.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 295 | 34.79 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 318 | 34.82 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 329 | 34.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 333 | 34.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 337 | 34.85 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 434 | 34.86 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 550 | 34.87 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 632 | 34.93 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 711 | 34.96 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 720 | 34.97 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 727 | 34.97 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 22 |
| 728 | 34.98 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 772 | 34.99 | temperature | 30 | 4320 | > th | dose dependent | sin | 18 | NA |
| 808 | 35.01 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 897 | 35.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 922 | 35.04 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |