BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0105100 Os02g0105100|AK122164
         (634 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0105100  Conserved hypothetical protein                     1170   0.0  
Os06g0105600  Conserved hypothetical protein                      720   0.0  

>Os02g0105100 Conserved hypothetical protein
          Length = 634

 Score = 1170 bits (3026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/634 (90%), Positives = 575/634 (90%)

Query: 1   MAHCHFLSGSPLRTLCLLIAGQPADVFNADNNISSNYGSQQPMEPSPNGMLDDWEENLAI 60
           MAHCHFLSGSPLRTLCLLIAGQPADVFNADNNISSNYGSQQPMEPSPNGMLDDWEENLAI
Sbjct: 1   MAHCHFLSGSPLRTLCLLIAGQPADVFNADNNISSNYGSQQPMEPSPNGMLDDWEENLAI 60

Query: 61  ITANRTKGDDLVITHLGDCLWKEKNEVAAAHSCYLVAELNIDPYSESARLCLLGADHLKC 120
           ITANRTKGDDLVITHLGDCLWKEKNEVAAAHSCYLVAELNIDPYSESARLCLLGADHLKC
Sbjct: 61  ITANRTKGDDLVITHLGDCLWKEKNEVAAAHSCYLVAELNIDPYSESARLCLLGADHLKC 120

Query: 121 PRTFASPEAIQRTEIYEYAKVLGNSQYILLPFQPYKLIYAYMLAEVGRVADSLRYCQASM 180
           PRTFASPEAIQRTEIYEYAKVLGNSQYILLPFQPYKLIYAYMLAEVGRVADSLRYCQASM
Sbjct: 121 PRTFASPEAIQRTEIYEYAKVLGNSQYILLPFQPYKLIYAYMLAEVGRVADSLRYCQASM 180

Query: 181 KVLKASGRAPELEAWKQLFSTLEDRIRTHQQGGYGTNLAPAKLVGKIFTSLDKSISRMMG 240
           KVLKASGRAPELEAWKQLFSTLEDRIRTHQQGGYGTNLAPAKLVGKIFTSLDKSISRMMG
Sbjct: 181 KVLKASGRAPELEAWKQLFSTLEDRIRTHQQGGYGTNLAPAKLVGKIFTSLDKSISRMMG 240

Query: 241 TPSAPLPPLPQGAVSDRESYTAPGATKFANSQSVMTMSSLMPSASVQSMSEMSDSGRKIA 300
           TPSAPLPPLPQGAVSDRESYTAPGATKFANSQSVMTMSSLMPSASVQSMSEMSDSGRKIA
Sbjct: 241 TPSAPLPPLPQGAVSDRESYTAPGATKFANSQSVMTMSSLMPSASVQSMSEMSDSGRKIA 300

Query: 301 HNRSVSEPDFGRTPKQGAGSDSTQSTAPGSGSSRFGWLGSTLQKTMGFVSKSHRQAKLGQ 360
           HNRSVSEPDFGRTPKQGAGSDSTQSTAPGSGSSRFGWLGSTLQKTMGFVSKSHRQAKLGQ
Sbjct: 301 HNRSVSEPDFGRTPKQGAGSDSTQSTAPGSGSSRFGWLGSTLQKTMGFVSKSHRQAKLGQ 360

Query: 361 QNKFYYDEKLKRWVXXXXXXXXXXXXXXXXXXXXSFQNGVVDYKLNGPMSASHTPNGFME 420
           QNKFYYDEKLKRWV                    SFQNGVVDYKLNGPMSASHTPNGFME
Sbjct: 361 QNKFYYDEKLKRWVEEGAEIPAEEPPLPPPPSKPSFQNGVVDYKLNGPMSASHTPNGFME 420

Query: 421 GKSSTSSEHGSGMPPIPPSQNQFSARGRMGVRSRYVDTFNKGGGGGAVPSYNKPAVASVT 480
           GKSSTSSEHGSGMPPIPPSQNQFSARGRMGVRSRYVDTFNKGGGGGAVPSYNKPAVASVT
Sbjct: 421 GKSSTSSEHGSGMPPIPPSQNQFSARGRMGVRSRYVDTFNKGGGGGAVPSYNKPAVASVT 480

Query: 481 PPSGAKFFVPTAAVVAAEQMPNQTAETHGETFRPDERSSPAETSFSSPPPATQFSAPLMV 540
           PPSGAKFFVPTAAVVAAEQMPNQTAETHGETFRPDERSSPAETSFSSPPPATQFSAPLMV
Sbjct: 481 PPSGAKFFVPTAAVVAAEQMPNQTAETHGETFRPDERSSPAETSFSSPPPATQFSAPLMV 540

Query: 541 PTIQRYPSMDNITTPNXXXXXXXXXXXXXXXXXXXXXXXXTYSEQINAVAGARSPDQQTM 600
           PTIQRYPSMDNITTPN                        TYSEQINAVAGARSPDQQTM
Sbjct: 541 PTIQRYPSMDNITTPNNGSGLSSGSNSSSFSRSRAASWSGTYSEQINAVAGARSPDQQTM 600

Query: 601 PSPLMPGKQXXXXXXXXXXXXXXXLTEDLHEVEL 634
           PSPLMPGKQ               LTEDLHEVEL
Sbjct: 601 PSPLMPGKQSHSRSNSNSSVQFNSLTEDLHEVEL 634



>Os06g0105600 Conserved hypothetical protein
          Length = 577

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/592 (65%), Positives = 437/592 (73%), Gaps = 22/592 (3%)

Query: 50  MLDDWEENLAIITANRTKGDDLVITHLGDCLWKEKNEVAAAHSCYLVAELNIDPYSESAR 109
           MLDDW+ENLAIITANRTKGDDLVITHLGDCLWKEKNEVAAAHSCYL AELNI+ YSES+R
Sbjct: 1   MLDDWQENLAIITANRTKGDDLVITHLGDCLWKEKNEVAAAHSCYLAAELNIESYSESSR 60

Query: 110 LCLLGADHLKCPRTFASPEAIQRTEIYEYAKVLGNSQYILLPFQPYKLIYAYMLAEVGRV 169
           +CL+GADHL+CPRTF SPEAIQRTE+YEYAKVLGNSQYILLPFQPYKLIYAYML EVG+V
Sbjct: 61  MCLIGADHLRCPRTFTSPEAIQRTEVYEYAKVLGNSQYILLPFQPYKLIYAYMLVEVGKV 120

Query: 170 ADSLRYCQASMKVLKASGRAPELEAWKQLFSTLEDRIRTHQQGGYGTNLAPAKLVGKIFT 229
           +DSLRYCQA +KVLKASGRAPELEAWKQLFS+LE+RIRT+QQGGYGTNLAPAKLVGK+FT
Sbjct: 121 SDSLRYCQACLKVLKASGRAPELEAWKQLFSSLEERIRTYQQGGYGTNLAPAKLVGKLFT 180

Query: 230 SLDKSISRMMGTPSAPLPPLPQGAVSDRESYTAPGATKFANSQSVMTMSSLMPSASVQSM 289
           SLDKS+SRMMGT  + L P+PQG++++R+SY+AP AT F N+Q VM MSSLM S S QSM
Sbjct: 181 SLDKSLSRMMGTQPSALSPVPQGSLTERDSYSAPAATNFVNNQPVMAMSSLMSSVSEQSM 240

Query: 290 SEMSDS---GRKIAHNRSVSEPDFGRTPKQGAGSDSTQSTAPGSGSSRFGWLGSTLQKTM 346
           SEMS +    RK+ HNRSVSEPDFGRTP QGAG D+ QST+ GSGSSRFGWL   LQKTM
Sbjct: 241 SEMSGNTGPDRKVTHNRSVSEPDFGRTPNQGAGLDNAQSTS-GSGSSRFGWL---LQKTM 296

Query: 347 GFVSKSHRQAKLGQQNKFYYDEKLKRWVXXXXXXXXXXXXXXXXXXXXSFQNGVVDYKLN 406
           G VS+SH QAKLG+QNKFYYDEKLKRWV                     FQNG+ D   N
Sbjct: 297 GLVSRSHHQAKLGEQNKFYYDEKLKRWVEEGADIPAEEPPLPPPPTKALFQNGIPDQSSN 356

Query: 407 GPMSASHTPNGFMEGKSSTSSEHGSGMPPIPPSQNQFSARGRMGVRSRYVDTFNKGGGGG 466
           GP S S+T NGF E +    S   SGMPP+PPSQNQFSARGRMGVRSRYVDTFNKGG   
Sbjct: 357 GPGSVSYTANGFSEARPLNPSGPSSGMPPMPPSQNQFSARGRMGVRSRYVDTFNKGGASA 416

Query: 467 AVPSYNKPAVASVTPPSGAKFFVPTAAVVAAEQMPNQTAETHGETFRPDERSSPAETSFS 526
             PSYNKPA  S+ P SGA FFVPT A VA+EQ+P+ T   H +  +P    +  E+S +
Sbjct: 417 TGPSYNKPATPSMNPLSGATFFVPTPATVASEQIPDPTVNVHQD--QPSSTIALRESS-A 473

Query: 527 SPPPATQFSAPLMVPTIQRYPSMDNITTPNXXXXXXXXXXXXXXXXXXXXXXXXTYSEQI 586
           SPPP+ Q S P+    IQRYPSMDNI TP                          YSEQ+
Sbjct: 474 SPPPSVQ-SIPVQ-SNIQRYPSMDNIMTP------SGSGNGSSFSRSRAASWSGAYSEQL 525

Query: 587 NAVAGARSPDQQ--TMPSPLMPGKQXXXXXXXXXXXXX--XXLTEDLHEVEL 634
           +  A +RSPD Q   M SPL+PG++                 L EDLHEVEL
Sbjct: 526 SGNAVSRSPDGQRTMMQSPLIPGQKQSHSRSSSNSSLQFNNGLGEDLHEVEL 577



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.128    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,863,674
Number of extensions: 989664
Number of successful extensions: 3710
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3698
Number of HSP's successfully gapped: 2
Length of query: 634
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 527
Effective length of database: 11,448,903
Effective search space: 6033571881
Effective search space used: 6033571881
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)