BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0105100 Os02g0105100|AK122164
(634 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47490.1 | chr5:19264675-19270487 FORWARD LENGTH=1362 483 e-136
AT5G47480.1 | chr5:19257420-19263132 FORWARD LENGTH=1351 456 e-128
>AT5G47490.1 | chr5:19264675-19270487 FORWARD LENGTH=1362
Length = 1361
Score = 483 bits (1242), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/575 (49%), Positives = 351/575 (61%), Gaps = 42/575 (7%)
Query: 1 MAHCHFLSGSPLRTLCLLIAGQPADVFNADNNI------SSNYGSQQPMEPSPNGMLDDW 54
MA + GSPLRTLCLL+AGQPA+VF+ + S N QQP + + MLD W
Sbjct: 743 MALRQLVPGSPLRTLCLLVAGQPAEVFSTGSTSDISFPGSVNLPPQQP-QFGCSSMLDSW 801
Query: 55 EENLAIITANRTKGDDLVITHLGDCLWKEKNEVAAAHSCYLVAELNIDPYSESARLCLLG 114
EENL IITANRT D+LVITHLGDC+WKE+ E+ AAH CYL+A+ N D YS++ARLCL+G
Sbjct: 802 EENLGIITANRTTDDELVITHLGDCMWKERGEIIAAHICYLIADKNFDTYSDTARLCLVG 861
Query: 115 ADHLKCPRTFASPEAIQRTEIYEYAKVLGNSQYILLPFQPYKLIYAYMLAEVGRVADSLR 174
ADH K PRT+ASPEAIQRTE+YEY+K LGNSQY LL FQPYK++YA+MLAEVG+++ + +
Sbjct: 862 ADHWKYPRTYASPEAIQRTELYEYSKTLGNSQYTLLTFQPYKVMYAHMLAEVGKLSTAQK 921
Query: 175 YCQASMKVLKASGRAPELEAWKQLFSTLEDRIRTHQQGGYGTNLAPAKLVGKIFTSLDKS 234
YCQA +K LK +GR+PE+E WKQ S+LE+RIR HQQGGY NL P KLVG +
Sbjct: 922 YCQAVLKCLK-TGRSPEVEMWKQFVSSLEERIRIHQQGGYTANLHPEKLVGVLLNFFGSK 980
Query: 235 ISRMMGTPSAPLPPLPQGAVSDRE-SYTAPGATKFANSQSVMTMSSLMPSASVQSMSEMS 293
R +G P P +G + E + ATK A SQSV TMSSLMP ASV+ E
Sbjct: 981 THRPVGGMPPPAPHSTKGNLQGNEYQHQQQEATKLAYSQSVNTMSSLMPPASVEPTHESG 1040
Query: 294 DSGRKIA-HNRSVSEPDFGRTPKQGAGSDSTQSTAPG------SGS---SRFGWLG-STL 342
SGR++A H RSVSEPDFGRTP Q S + G SGS SRF G
Sbjct: 1041 GSGRRMAVHTRSVSEPDFGRTPIQEMADSSKEKAVDGVTKLKSSGSVAGSRFSRFGFGIF 1100
Query: 343 QKTMGFV-SKSHRQAKLGQQNKFYYDEKLKRWVXXXXXXXXXXXXXXXXXXXXSFQNGVV 401
+ T+G V ++S ++AKLG +N+FYYD+KLKRWV +FQN +
Sbjct: 1101 KDTVGRVLARSSKEAKLGAENQFYYDDKLKRWVERGVEPPAEEAALPPPPTIGAFQNNSL 1160
Query: 402 DYKLNGPMSASHTPNGFMEGKSSTSSEHGSGMPPIPPSQNQFSARGRMGVRSRYVDTFNK 461
Y+ M S NG T SE+ SG+PPI NQFSARGR GVR+RYVDT+N
Sbjct: 1161 GYENKSDMIPS---NGNWSSGGPTPSENSSGIPPISHGSNQFSARGRTGVRARYVDTYNP 1217
Query: 462 GGGGGAVPSYNKPAVASVTP--PSGAKFFVPTA-AVVAAEQ-MPNQTAETHGETFRPDER 517
G G + P+V + P P+ AKFFVP A A + +Q M AET E DE
Sbjct: 1218 PGRGNSHTMIPSPSVQTAKPPIPAKAKFFVPAAPASFSNDQAMEPAAAETRQEEISADE- 1276
Query: 518 SSPAETSFSSPPPATQFSAPLMVPTIQRYPSMDNI 552
S +PPP +QRYPSMDNI
Sbjct: 1277 ---VVASSGAPPPM----------MMQRYPSMDNI 1298
>AT5G47480.1 | chr5:19257420-19263132 FORWARD LENGTH=1351
Length = 1350
Score = 456 bits (1174), Expect = e-128, Method: Compositional matrix adjust.
Identities = 277/582 (47%), Positives = 353/582 (60%), Gaps = 74/582 (12%)
Query: 1 MAHCHFLSGSPLRTLCLLIAGQPADVFNADNNISSNYGSQQPMEPSPNGMLDDWEENLAI 60
MA + GSPLRTLCLL+AGQPA+V S + MLD+WEENL I
Sbjct: 750 MALRQLIPGSPLRTLCLLVAGQPAEVCPTG---------------SSSSMLDNWEENLGI 794
Query: 61 ITANRTKGDDLVITHLGDCLWKEKNEVAAAHSCYLVAELNIDPYSESARLCLLGADHLKC 120
ITANRT DDLVI HLGD +WKE+ E+ AAH CYL+A+ N DPYSESARLCL+GADH KC
Sbjct: 795 ITANRTTDDDLVIIHLGDSMWKERGEIIAAHICYLIADKNFDPYSESARLCLVGADHWKC 854
Query: 121 PRTFASPEAIQRTEIYEYAKVLGNSQYILLPFQPYKLIYAYMLAEVGRVADSLRYCQASM 180
PRT+ASP+AIQRTE+YEY+K LGNSQYILLPFQPYK+IYA+MLAEVG+++ + +YCQA +
Sbjct: 855 PRTYASPDAIQRTELYEYSKTLGNSQYILLPFQPYKIIYAHMLAEVGKLSTAQKYCQAVI 914
Query: 181 KVLKASGRAPELEAWKQLFSTLEDRIRTHQQGGYGTNLAPAKLVGKIFTSLDKSISRMMG 240
+ LK S R+ E+E WKQ S+LE+RIR+HQ+GG NLAPAKLVGK+ SL G
Sbjct: 915 RCLKTS-RSSEVEMWKQFASSLEERIRSHQEGG---NLAPAKLVGKLLNSL-------WG 963
Query: 241 TPSAPLPPLPQGAVSDRE----SYTAPGATKFANSQSVMTMSSLMPSASVQSMSEMSDSG 296
P PP P + + + A K + SQS TMSSLMP AS++ + E +G
Sbjct: 964 MP----PPAPHSTTGNPQVNEYQHQQQEAAKLSYSQSANTMSSLMPPASIEPVHEWGGNG 1019
Query: 297 RKI-AHNRSVSEPDFGRTPKQGAGSDSTQSTAPGSG----------SSRFGWLG-STLQK 344
R + AH+RSVSEPDF RTP Q +DS++ AP SSRF G L+
Sbjct: 1020 RTMAAHSRSVSEPDFSRTPIQDQ-TDSSKDKAPDGVTQVKSTRKVPSSRFSRFGIGILKN 1078
Query: 345 TMG--FVSKSHRQAKLGQQNKFYYDEKLKRWVXXXXXXXXXXXXXXXXXXXXSFQNGVVD 402
T+G F S+S +AKLG +N+FYYD+ LKRWV F++ +
Sbjct: 1079 TVGKVFPSRSSNEAKLGNENQFYYDDNLKRWVERGVEPPAEEAALPPPPTSVPFRSNSLG 1138
Query: 403 YKLNGPMSAS-HTPNGFMEGKSSTSSEHGSGMPPIPPSQNQFSARGRMGVRSRYVDTFNK 461
++ + +G S T SE+ G+PP+ NQFSARGRMGVR+RYVDT+N+
Sbjct: 1139 HENKSEIKNEMSPSSGSWSSGSPTPSENSPGIPPVSQGSNQFSARGRMGVRARYVDTYNQ 1198
Query: 462 GGGGGAVPSYNKPAVASVTP--PSGAKFFVPTA-AVVAAEQ-MPNQTAETHGETFRPDER 517
G+ Y P V S P P+ AKFFVP A A A +Q M + +AET E DE
Sbjct: 1199 ----GSSSMYQSPPVQSSKPPIPAKAKFFVPAAPASFANDQVMESVSAETRQEN-SGDEA 1253
Query: 518 S-------SPAETSFSSPPPATQFSAPLMVPTIQRYPSMDNI 552
P++ SF SP P +P+ +QR+PS+DNI
Sbjct: 1254 VVGSAGAPGPSQASFQSPTP-----SPI---AMQRFPSVDNI 1287
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.128 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,985,642
Number of extensions: 543950
Number of successful extensions: 1783
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1766
Number of HSP's successfully gapped: 2
Length of query: 634
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 529
Effective length of database: 8,227,889
Effective search space: 4352553281
Effective search space used: 4352553281
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)