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Os01g0972200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Zinc transporter 2 precursor (ZRT/IRT-like protein 2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.58 (0.0493) R2 : 0.67
β1 : 2.79 (0.209) R2dD : 0.27 R2D : 0.207
β2 : 1.57 (0.102) R2dC : 0.174 R2C : 0.194
β3 : 0.416 (0.268) R2dE : 0.0035 R2E : -0.0609
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.68 (0.69) R2dD*E : 0.22 R2D*E : 0.235
γ1 : 0.627 (0.0918) R2dN8 : 0.0528 R2N8 : 0.00668
σ : 0.752
deviance : 260.7
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C
peak time of C : 3.61
E
wheather : radiation
threshold : 2.543
memory length : 4240
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17
open length of G : 1.17

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
260.64 0.759 6.58 2.85 1.58 0.264 -0.47 9.5 0.65 3.65 2.074 4230 17 1.09
343.25 0.863 6.22 3.16 1.61 0.99 -0.435 -- 0.843 3.31 -13.46 19015 16.8 1.1
260.7 0.752 6.58 2.79 1.57 0.416 -- 9.68 0.627 3.61 2.543 4240 17 1.17
341.73 0.861 6.23 3.43 1.59 1.09 -- -- 0.875 3.35 -15.66 18728 16.9 1.25
395.96 0.927 6.6 2.97 -- 0.505 -- 10 0.624 -- 2.06 4254 17 1.17
374.16 0.907 6.19 2.81 1.65 -- -0.174 -- 1.02 3.59 -- -- -- --
374.25 0.906 6.19 2.81 1.65 -- -- -- 1.03 3.58 -- -- -- --
391.37 0.921 6.21 3.6 -- 1.57 -- -- 1.02 -- -21.04 15261 17.9 1.31
513.62 1.06 6.25 -- 1.73 -1.88 -- -- 0.773 3.42 -28.42 47520 16.1 2.47
525.82 1.07 6.19 2.88 -- -- -- -- 1.07 -- -- -- -- --
582.38 1.13 6.26 -- 1.7 -- -- -- 0.713 3.57 -- -- -- --
603.71 1.14 6.24 -- -- 1.25 -- -- 0.703 -- -23.92 15191 18.5 2.83
744.51 1.27 6.27 -- -- -- -- -- 0.75 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 263.34 radiation 20.0 4320 < th dose independent rect. 16 4
6 263.70 radiation 20.0 4320 < th dose independent rect. 16 8
8 263.75 radiation 20.0 4320 < th dose independent rect. 16 11
10 263.84 radiation 20.0 4320 < th dose independent rect. 16 14
14 264.80 radiation 1.0 4320 > th dose dependent rect. 17 1
25 265.23 radiation 40.0 4320 < th dose dependent rect. 17 3
31 265.94 radiation 40.0 4320 < th dose dependent rect. 17 7
34 266.08 radiation 40.0 4320 < th dose dependent rect. 17 5
44 266.66 radiation 20.0 4320 < th dose dependent rect. 17 10
76 271.95 temperature 20.0 43200 < th dose dependent rect. 3 1
85 272.35 radiation 30.0 4320 < th dose independent rect. 15 17
116 273.13 temperature 20.0 4320 < th dose independent rect. 22 2
133 273.43 humidity 60.0 43200 < th dose independent rect. 20 13
138 273.55 temperature 20.0 43200 < th dose independent rect. 19 1
154 273.80 temperature 20.0 43200 < th dose dependent sin 8 NA
165 273.87 temperature 30.0 43200 < th dose dependent rect. 3 1
184 274.09 temperature 10.0 43200 > th dose dependent rect. 3 1
199 274.20 humidity 60.0 43200 > th dose independent rect. 20 13
220 274.30 precipitation 0.1 43200 < th dose independent rect. 4 6
221 274.30 precipitation 0.1 43200 < th dose dependent rect. 4 6
249 274.47 temperature 20.0 43200 > th dose independent rect. 19 2
283 274.64 precipitation 0.1 43200 > th dose independent rect. 4 6
294 274.69 precipitation 0.1 43200 > th dose dependent rect. 4 6
346 274.93 temperature 20.0 43200 < th dose independent rect. 6 4
360 274.97 precipitation 0.1 43200 < th dose independent rect. 2 8
366 274.97 precipitation 0.1 43200 < th dose dependent rect. 2 8
373 274.99 temperature 20.0 43200 > th dose independent rect. 6 4
424 275.16 precipitation 0.1 43200 > th dose independent rect. 2 8
473 275.29 temperature 20.0 43200 < th dose independent rect. 7 21
511 275.36 temperature 20.0 43200 > th dose independent rect. 6 20
527 275.38 humidity 90.0 43200 > th dose dependent rect. 5 12
578 275.44 temperature 15.0 43200 > th dose dependent rect. 22 1
590 275.46 temperature 20.0 43200 < th dose independent rect. 12 14
598 275.47 temperature 20.0 43200 < th dose independent sin 17 NA
636 275.50 temperature 20.0 43200 < th dose independent rect. 19 21
677 275.53 temperature 20.0 43200 < th dose independent rect. 3 22
686 275.54 temperature 20.0 43200 > th dose independent sin 17 NA
688 275.54 temperature 20.0 43200 > th dose independent rect. 12 14
707 275.55 temperature 20.0 43200 > th dose independent rect. 3 22
751 275.57 precipitation 0.1 43200 > th dose dependent rect. 2 8
757 275.58 temperature 20.0 43200 < th dose independent no NA NA
761 275.58 temperature 20.0 43200 > th dose independent rect. 19 21
767 275.58 temperature 20.0 43200 < th dose independent rect. 11 23
782 275.59 temperature 20.0 43200 < th dose independent rect. 23 23
826 275.62 temperature 20.0 43200 > th dose independent rect. 15 22
843 275.63 temperature 20.0 43200 > th dose independent no NA NA
857 275.63 temperature 20.0 43200 > th dose independent rect. 12 23
886 275.65 temperature 20.0 43200 > th dose independent rect. 22 23