Os01g0958900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MLH1 protein (Fragment).
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Os01g0958900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MLH1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.38 | 0.447 | 7.87 | 0.846 | 1.05 | -3.22 | -0.124 | 1.29 | 0.0122 | 19.5 | 29.79 | 131 | -- | -- |
| 92.18 | 0.447 | 7.85 | 1.03 | 1.02 | -3.27 | -0.183 | -- | 0.036 | 19.6 | 29.6 | 149 | -- | -- |
| 90.17 | 0.442 | 7.87 | 0.833 | 1.02 | -3.22 | -- | 1.37 | 0.00151 | 19.4 | 29.78 | 151 | -- | -- |
| 92.16 | 0.447 | 7.84 | 1.06 | 1.01 | -3.21 | -- | -- | 0.0592 | 19.5 | 29.54 | 152 | -- | -- |
| 122.47 | 0.515 | 7.88 | 0.801 | -- | -3.78 | -- | 1.13 | -0.162 | -- | 30.13 | 288 | -- | -- |
| 229.99 | 0.711 | 7.7 | 1.87 | 1.76 | -- | 0.277 | -- | 0.701 | 17.4 | -- | -- | -- | -- |
| 230.18 | 0.71 | 7.7 | 1.86 | 1.76 | -- | -- | -- | 0.702 | 17.4 | -- | -- | -- | -- |
| 123.77 | 0.518 | 7.84 | 0.89 | -- | -3.88 | -- | -- | -0.0718 | -- | 30.1 | 288 | -- | -- |
| 118.31 | 0.507 | 7.88 | -- | 0.83 | -3.66 | -- | -- | -0.15 | 19.7 | 29.4 | 204 | -- | -- |
| 391.59 | 0.925 | 7.68 | 1.81 | -- | -- | -- | -- | 0.659 | -- | -- | -- | -- | -- |
| 321.83 | 0.839 | 7.75 | -- | 1.73 | -- | -- | -- | 0.494 | 17.5 | -- | -- | -- | -- |
| 143 | 0.557 | 7.88 | -- | -- | -4.16 | -- | -- | -0.23 | -- | 29.9 | 294 | -- | -- |
| 477.58 | 1.02 | 7.72 | -- | -- | -- | -- | -- | 0.458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 9 | 91.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 10 | 91.97 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 14 | 93.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 17 | 93.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 18 | 93.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 21 | 93.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 29 | 95.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 43 | 96.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 51 | 97.43 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 107 | 102.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 206 | 104.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 212 | 104.85 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 241 | 105.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 250 | 105.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 252 | 105.28 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 274 | 105.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 296 | 105.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 299 | 105.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 303 | 105.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 370 | 106.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 456 | 106.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 480 | 107.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 628 | 108.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 659 | 108.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 13 |
| 772 | 109.20 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 907 | 109.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 951 | 110.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 9 |