BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0958900 Os01g0958900|AK103319
(724 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0958900 Similar to MLH1 protein (Fragment) 1439 0.0
Os02g0592300 Similar to PMS5 protein (HPMS5 protein) (Fragm... 157 2e-38
>Os01g0958900 Similar to MLH1 protein (Fragment)
Length = 724
Score = 1439 bits (3724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 696/724 (96%), Positives = 696/724 (96%)
Query: 1 MDEPSPRGGGCAGEPPRIRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVA 60
MDEPSPRGGGCAGEPPRIRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVA
Sbjct: 1 MDEPSPRGGGCAGEPPRIRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVA 60
Query: 61 VKDGGLKLIQVSDDGHGIRFEDLAILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYV 120
VKDGGLKLIQVSDDGHGIRFEDLAILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYV
Sbjct: 61 VKDGGLKLIQVSDDGHGIRFEDLAILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYV 120
Query: 121 GHVTVTTITEGQLHGYRVSYRDGVMENEPKPCAAVKGTQVMVENLFYNMVARKKTLQNSN 180
GHVTVTTITEGQLHGYRVSYRDGVMENEPKPCAAVKGTQVMVENLFYNMVARKKTLQNSN
Sbjct: 121 GHVTVTTITEGQLHGYRVSYRDGVMENEPKPCAAVKGTQVMVENLFYNMVARKKTLQNSN 180
Query: 181 DDYPKIVDFISRFAVHHINVTFSCRKHGANRADVHSASTSSRLDAIRSVYGASVVRDLIE 240
DDYPKIVDFISRFAVHHINVTFSCRKHGANRADVHSASTSSRLDAIRSVYGASVVRDLIE
Sbjct: 181 DDYPKIVDFISRFAVHHINVTFSCRKHGANRADVHSASTSSRLDAIRSVYGASVVRDLIE 240
Query: 241 IKVSYEDAADSIFKMDGYISNANYVAKKITMILFINDRLVDCTALKRAIEFVYSATLPQA 300
IKVSYEDAADSIFKMDGYISNANYVAKKITMILFINDRLVDCTALKRAIEFVYSATLPQA
Sbjct: 241 IKVSYEDAADSIFKMDGYISNANYVAKKITMILFINDRLVDCTALKRAIEFVYSATLPQA 300
Query: 301 SKPFIYMSIHLPSEHVDVNIHPTKKEVSLLNQERIIETIRNAIEEKLMNSNTTRIFQTQA 360
SKPFIYMSIHLPSEHVDVNIHPTKKEVSLLNQERIIETIRNAIEEKLMNSNTTRIFQTQA
Sbjct: 301 SKPFIYMSIHLPSEHVDVNIHPTKKEVSLLNQERIIETIRNAIEEKLMNSNTTRIFQTQA 360
Query: 361 LNLSGIAQANPQKDKVSEASMGSGTKSQKIPVSQMVRTDPRNPSGRLHTYWHGQSSNLEK 420
LNLSGIAQANPQKDKVSEASMGSGTKSQKIPVSQMVRTDPRNPSGRLHTYWHGQSSNLEK
Sbjct: 361 LNLSGIAQANPQKDKVSEASMGSGTKSQKIPVSQMVRTDPRNPSGRLHTYWHGQSSNLEK 420
Query: 421 KFDLXXXXXXXXXXXXQKDAGDLSSRHELLVEIDSSFHPGLLDIVKNCTYVGLADEAFAL 480
KFDL QKDAGDLSSRHELLVEIDSSFHPGLLDIVKNCTYVGLADEAFAL
Sbjct: 421 KFDLVSVRNVVRSRRNQKDAGDLSSRHELLVEIDSSFHPGLLDIVKNCTYVGLADEAFAL 480
Query: 481 IQHNTRLYLVNVVNISKELMYQQALCRFGNFNAIQLSEPAPLQELLVMALKDDELMSDEK 540
IQHNTRLYLVNVVNISKELMYQQALCRFGNFNAIQLSEPAPLQELLVMALKDDELMSDEK
Sbjct: 481 IQHNTRLYLVNVVNISKELMYQQALCRFGNFNAIQLSEPAPLQELLVMALKDDELMSDEK 540
Query: 541 DDEKLEIAEVNTEILKENAEMINEYFSIHIDQDGKLTRLPVVLDQYTPDMDRLPEFVLAL 600
DDEKLEIAEVNTEILKENAEMINEYFSIHIDQDGKLTRLPVVLDQYTPDMDRLPEFVLAL
Sbjct: 541 DDEKLEIAEVNTEILKENAEMINEYFSIHIDQDGKLTRLPVVLDQYTPDMDRLPEFVLAL 600
Query: 601 GNDVTWDDEKECFRTVASAVGNFYALHPPILPNPSGNGIHLYKKNRDSMADEHAENDLIS 660
GNDVTWDDEKECFRTVASAVGNFYALHPPILPNPSGNGIHLYKKNRDSMADEHAENDLIS
Sbjct: 601 GNDVTWDDEKECFRTVASAVGNFYALHPPILPNPSGNGIHLYKKNRDSMADEHAENDLIS 660
Query: 661 DENDVDXXXXXXXXXXXXXXXXTIQHVLFPSMRLFLKPPKSMATDGTFVQVASLEKLYKI 720
DENDVD TIQHVLFPSMRLFLKPPKSMATDGTFVQVASLEKLYKI
Sbjct: 661 DENDVDQELLAEAEAAWAQREWTIQHVLFPSMRLFLKPPKSMATDGTFVQVASLEKLYKI 720
Query: 721 FERC 724
FERC
Sbjct: 721 FERC 724
>Os02g0592300 Similar to PMS5 protein (HPMS5 protein) (Fragment)
Length = 923
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 181/341 (53%), Gaps = 14/341 (4%)
Query: 12 AGEPPRIRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVAVKDGGLKLIQV 71
G P IR + +S V+RI +G+VI SSAVKEL+ENSLDAGA++V V ++ G V
Sbjct: 3 GGSSPAIRPIGKSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVTLRSYGEDSFTV 62
Query: 72 SDDGHGIRFEDLAILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVGHVTVTTITEG 131
+D+G GI + L +H TSK+S + DL ++ + GFRGEAL+S+ +G +TV T T+
Sbjct: 63 ADNGTGISPTNFQALALKHHTSKISDFGDLASVATFGFRGEALSSLCALGKLTVETRTKD 122
Query: 132 QLHGYRVSY-RDGVMENEPKPCAAVKGTQVMVENLFYNMVARKKTL-QNSNDDYPKIVDF 189
+ G R+ + GV+ E K V GT V VE LF + R K +N +Y K++
Sbjct: 123 EPVGTRLEFAHSGVVTGERKMARPV-GTAVTVEKLFSTLPVRSKEFSRNIRKEYGKVISL 181
Query: 190 ISRFAVHHINVTFSCRK---HGANRADVHSASTSSRLDAIRSVYGASVVRDLIEIKVSYE 246
++ +A+ V C + A + + +SS D I +V+G + + L V+
Sbjct: 182 LNAYALIAKGVRLVCTNTVGKNSKSAVLRTQGSSSLKDNIITVFGLNTFKCLQPFNVTIS 241
Query: 247 DAADSIFKMDGYISNANYVAKKIT---MILFINDRLVDCTALKRAIEFVYSATLPQASKP 303
+ ++DG++S + + + ++N R VD + + + +Y ++ + P
Sbjct: 242 EGC----QVDGFLSKPGPGSGRNSGDRQFFYVNGRPVDMPKVSKLVNELYRSSNAK-QYP 296
Query: 304 FIYMSIHLPSEHVDVNIHPTKKEVSLLNQERIIETIRNAIE 344
++ +P+ DVN+ P K+++ ++ I+ ++R IE
Sbjct: 297 VAVLNFCIPTTSYDVNVAPDKRKIFFSSEHAILLSLREGIE 337
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,952,243
Number of extensions: 923671
Number of successful extensions: 2589
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2587
Number of HSP's successfully gapped: 2
Length of query: 724
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 616
Effective length of database: 11,396,689
Effective search space: 7020360424
Effective search space used: 7020360424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)