BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0958900 Os01g0958900|AK103319
(724 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G09140.1 | chr4:5817107-5821035 REVERSE LENGTH=738 958 0.0
AT4G02460.1 | chr4:1076306-1080510 REVERSE LENGTH=924 154 1e-37
AT4G35520.1 | chr4:16865488-16871527 FORWARD LENGTH=1170 98 1e-20
>AT4G09140.1 | chr4:5817107-5821035 REVERSE LENGTH=738
Length = 737
Score = 958 bits (2477), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/726 (63%), Positives = 570/726 (78%), Gaps = 4/726 (0%)
Query: 2 DEPSPRGGGCAGEPPRIRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVAV 61
+E SP EPP+I+RLEESVVNRIAAGEVIQRP SAVKEL+ENSLDA +SS+SV V
Sbjct: 13 EEESPATTIVPREPPKIQRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADSSSISVVV 72
Query: 62 KDGGLKLIQVSDDGHGIRFEDLAILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVG 121
KDGGLKLIQVSDDGHGIR EDL ILCERHTTSKL+ +EDL ++ SMGFRGEALASMTYV
Sbjct: 73 KDGGLKLIQVSDDGHGIRREDLPILCERHTTSKLTKFEDLFSLSSMGFRGEALASMTYVA 132
Query: 122 HVTVTTITEGQLHGYRVSYRDGVMENEPKPCAAVKGTQVMVENLFYNMVARKKTLQNSND 181
HVTVTTIT+GQ+HGYRVSYRDGVME+EPK CAAVKGTQ+MVENLFYNM+AR+KTLQNS D
Sbjct: 133 HVTVTTITKGQIHGYRVSYRDGVMEHEPKACAAVKGTQIMVENLFYNMIARRKTLQNSAD 192
Query: 182 DYPKIVDFISRFAVHHINVTFSCRKHGANRADVHSASTSSRLDAIRSVYGASVVRDLIEI 241
DY KIVD +SR A+H+ NV+FSCRKHGA +ADVHS + SRLD+IRSVYG SV ++L+++
Sbjct: 193 DYGKIVDLLSRMAIHYNNVSFSCRKHGAVKADVHSVVSPSRLDSIRSVYGVSVAKNLMKV 252
Query: 242 KVSYEDAADSIFKMDGYISNANYVAKKITMILFINDRLVDCTALKRAIEFVYSATLPQAS 301
+VS D++ F M+G+ISN+NYVAKK ++LFINDRLV+C+ALKRAIE VY+ATLP+AS
Sbjct: 253 EVSSCDSSGCTFDMEGFISNSNYVAKKTILVLFINDRLVECSALKRAIEIVYAATLPKAS 312
Query: 302 KPFIYMSIHLPSEHVDVNIHPTKKEVSLLNQERIIETIRNAIEEKLMNSNTTRIFQTQAL 361
KPF+YMSI+LP EHVD+NIHPTKKEVSLLNQE IIE I++ +E KL N+N TR FQ Q +
Sbjct: 313 KPFVYMSINLPREHVDINIHPTKKEVSLLNQEIIIEMIQSEVEVKLRNANDTRTFQEQKV 372
Query: 362 NLSGIAQANPQKDKVSEASMGSGTKSQKIPVSQMVRTDPRNPSGRLHTYWHGQSSNL-EK 420
+ QK + SG K+QK+PV++MVRTD +P+GRLH + + +L +K
Sbjct: 373 EYIQ-STLTSQKSDSPVSQKPSGQKTQKVPVNKMVRTDSSDPAGRLHAFLQPKPQSLPDK 431
Query: 421 KFDLXXXXXXXXXXXXQKDAGDLSSRHELLVEIDSSFHPGLLDIVKNCTYVGLADEAFAL 480
L K+ DLSS EL+ +DS HPG+L+ V+NCTYVG+AD+ FAL
Sbjct: 432 VSSLSVVRSSVRQRRNPKETADLSSVQELIAGVDSCCHPGMLETVRNCTYVGMADDVFAL 491
Query: 481 IQHNTRLYLVNVVNISKELMYQQALCRFGNFNAIQLSEPAPLQELLVMALKDDEL--MSD 538
+Q+NT LYL NVVN+SKELMYQQ L RF +FNAIQLS+PAPL EL+++ALK+++L +D
Sbjct: 492 VQYNTHLYLANVVNLSKELMYQQTLRRFAHFNAIQLSDPAPLSELILLALKEEDLDPGND 551
Query: 539 EKDDEKLEIAEVNTEILKENAEMINEYFSIHIDQDGKLTRLPVVLDQYTPDMDRLPEFVL 598
KDD K IAE+NTE+LKE AEM+ EYFS+HID L+RLPV+LDQYTPDMDR+PEF+L
Sbjct: 552 TKDDLKERIAEMNTELLKEKAEMLEEYFSVHIDSSANLSRLPVILDQYTPDMDRVPEFLL 611
Query: 599 ALGNDVTWDDEKECFRTVASAVGNFYALHPPILPNPSGNGIHLYKKNRDSMADEHAENDL 658
LGNDV W+DEK CF+ V++A+GNFYA+HPP+LPNPSG+GI Y K +S ++
Sbjct: 612 CLGNDVEWEDEKSCFQGVSAAIGNFYAMHPPLLPNPSGDGIQFYSKRGESSQEKSDLEGN 671
Query: 659 ISDENDVDXXXXXXXXXXXXXXXXTIQHVLFPSMRLFLKPPKSMATDGTFVQVASLEKLY 718
+ E+++D +IQHVLFPSMRLFLKPP SMA++GTFV+VASLEKLY
Sbjct: 672 VDMEDNLDQDLLSDAENAWAQREWSIQHVLFPSMRLFLKPPASMASNGTFVKVASLEKLY 731
Query: 719 KIFERC 724
KIFERC
Sbjct: 732 KIFERC 737
>AT4G02460.1 | chr4:1076306-1080510 REVERSE LENGTH=924
Length = 923
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 178/345 (51%), Gaps = 12/345 (3%)
Query: 18 IRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVAVKDGGLKLIQVSDDGHG 77
IR + +V++RI +G+VI SSAVKEL+ENSLDAGA+S+ + ++D G QV D+G G
Sbjct: 17 IRPINRNVIHRICSGQVILDLSSAVKELVENSLDAGATSIEINLRDYGEDYFQVIDNGCG 76
Query: 78 IRFEDLAILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVGHVTVTTITEGQLHGYR 137
I + +L +H TSKL + DL + + GFRGEAL+S+ +G++TV T T+ +
Sbjct: 77 ISPTNFKVLALKHHTSKLEDFTDLLNLTTYGFRGEALSSLCALGNLTVETRTKNEPVATL 136
Query: 138 VSY-RDGVMENEPKPCAAVKGTQVMVENLFYNMVARKKTLQ-NSNDDYPKIVDFISRFAV 195
+++ G++ E K + GT V V LF N+ R K + N +Y K+V ++ +A+
Sbjct: 137 LTFDHSGLLTAEKKTARQI-GTTVTVRKLFSNLPVRSKEFKRNIRKEYGKLVSLLNAYAL 195
Query: 196 HHINVTFSCRK-HGANRADV--HSASTSSRLDAIRSVYGASVVRDL--IEIKVSYEDAAD 250
V F C G N V ++ S D I +V+G S L + I VS + +
Sbjct: 196 IAKGVRFVCSNTTGKNPKSVVLNTQGRGSLKDNIITVFGISTFTSLQPVSICVSEDCRVE 255
Query: 251 SIFKMDGYISNANYVAKKITMILFINDRLVDCTALKRAIEFVYSATLPQASKPFIYMSIH 310
G + N ++ FIN R VD + + + +Y T + P +
Sbjct: 256 GFLSKPGQGTGRNLADRQ---YFFINGRPVDMPKVSKLVNELYKDTSSR-KYPVTILDFI 311
Query: 311 LPSEHVDVNIHPTKKEVSLLNQERIIETIRNAIEEKLMNSNTTRI 355
+P D+N+ P K++V ++ +I ++R + E +SN + I
Sbjct: 312 VPGGACDLNVTPDKRKVFFSDETSVIGSLREGLNEIYSSSNASYI 356
>AT4G35520.1 | chr4:16865488-16871527 FORWARD LENGTH=1170
Length = 1169
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 131/254 (51%), Gaps = 29/254 (11%)
Query: 18 IRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVAVKDGGLKL-IQVSDDGH 76
I+ L E V + + +G ++ + V+EL+ NSLDAGA+ VS+ V G + ++V DDG
Sbjct: 4 IKPLPEGVRHSMRSGIIMFDMARVVEELVFNSLDAGATKVSIFV--GVVSCSVKVVDDGS 61
Query: 77 GIRFEDLAILCERHTTSKLSAYEDLQTI-KSMGFRGEALASMTYVGHVTVTTITEGQLHG 135
G+ +DL +L ER+ TSK + +++T ++ GFRGEALAS++ + + V T G+ +G
Sbjct: 62 GVSRDDLVLLGERYATSKFHDFTNVETASETFGFRGEALASISDISLLEVRTKAIGRPNG 121
Query: 136 YRVSYRD------GVMENEPKPCAAVKGTQVMVENLFYNMVARKKTLQNSNDDYPK---- 185
YR + G+ ++ GT V V +LFY+ R+K +Q+S PK
Sbjct: 122 YRKVMKGSKCLHLGIDDDRKD-----SGTTVTVRDLFYSQPVRRKYMQSS----PKKVLE 172
Query: 186 -IVDFISRFAVHHINVTFSCRKHGANRADVHSASTSSRLDAIRSVYGASVVRDLIEIKVS 244
I + R A+ H NV+FS ++ + +SS + G V L ++ V+
Sbjct: 173 SIKKCVFRIALVHSNVSFSVLDIESDEELFQTNPSSSAFSLLMRDAGTEAVNSLCKVNVT 232
Query: 245 YEDAADSIFKMDGY 258
D + + G+
Sbjct: 233 -----DGMLNVSGF 241
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,878,623
Number of extensions: 608667
Number of successful extensions: 1717
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1707
Number of HSP's successfully gapped: 3
Length of query: 724
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 618
Effective length of database: 8,200,473
Effective search space: 5067892314
Effective search space used: 5067892314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)