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Os01g0924900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GTP-binding signal recognition particle SRP54, G-domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.016) R2 : 0.0254
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.116 (0.0337) R2dN8 : 0.0328 R2N8 : 0.0254
σ : 0.302
deviance : 41.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
12.37 0.165 11.9 -0.0061 0.486 -0.45 -0.0871 4.25 0.154 17 29.87 4340 -- --
14.42 0.178 11.8 0.75 0.501 -0.00435 -0.0735 -- 0.211 17 29.87 4340 -- --
12.39 0.164 11.9 -0.00414 0.486 -0.451 -- 4.25 0.153 17 29.9 4320 -- --
14.24 0.176 11.8 0.755 0.497 0.0561 -- -- 0.199 17.1 31.41 2569 -- --
24.5 0.231 11.9 -0.192 -- -0.482 -- 4.73 0.0831 -- 29.6 4399 -- --
14.42 0.178 11.8 0.75 0.502 -- -0.0726 -- 0.211 17 -- -- -- --
14.43 0.178 11.8 0.75 0.502 -- -- -- 0.21 17 -- -- -- --
25.95 0.238 11.8 0.701 -- -0.172 -- -- 0.189 -- 29.2 17060 -- --
28.99 0.251 11.8 -- 0.473 -0.0713 -- -- 0.139 17.1 31.8 6579 -- --
27.68 0.246 11.8 0.732 -- -- -- -- 0.198 -- -- -- -- --
29.26 0.253 11.8 -- 0.489 -- -- -- 0.127 17.1 -- -- -- --
34.54 0.274 11.8 -- -- -0.373 -- -- -0.0515 -- 26.67 46689 -- --
41.8 0.302 11.8 -- -- -- -- -- 0.116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.33 wind 9.0 270 < th dose dependent rect. 7 8
2 11.42 wind 7.0 270 < th dose independent rect. 6 9
9 11.58 temperature 15.0 270 > th dose independent rect. 6 9
10 11.58 atmosphere 1000.0 90 > th dose independent rect. 7 9
12 11.59 wind 7.0 30 < th dose independent rect. 8 9
13 11.59 atmosphere 1000.0 10 > th dose independent rect. 8 9
44 11.74 humidity 60.0 90 > th dose independent rect. 17 14
49 11.75 radiation 1.0 270 > th dose independent rect. 6 9
58 11.77 humidity 50.0 270 > th dose independent rect. 6 9
60 11.77 temperature 30.0 10 < th dose independent rect. 17 15
61 11.77 precipitation 0.1 90 < th dose independent rect. 16 15
63 11.77 precipitation 0.1 90 < th dose dependent rect. 16 15
65 11.78 precipitation 0.1 90 < th dose independent rect. 7 9
68 11.78 precipitation 0.1 10 < th dose independent rect. 17 15
70 11.78 precipitation 0.1 90 < th dose dependent rect. 7 9
72 11.78 precipitation 0.1 10 < th dose dependent rect. 17 15
76 11.79 atmosphere 1015.0 90 < th dose independent rect. 7 9
77 11.79 temperature 10.0 90 > th dose independent rect. 16 15
78 11.79 radiation 30.0 90 < th dose independent rect. 16 15
95 11.82 temperature 10.0 10 > th dose independent rect. 8 9
98 11.82 atmosphere 1015.0 10 < th dose independent rect. 8 9
99 11.82 precipitation 0.1 10 < th dose independent rect. 8 9
100 11.82 temperature 10.0 10 > th dose independent rect. 17 15
102 11.82 precipitation 0.1 10 < th dose dependent rect. 8 9
109 11.83 wind 1.0 270 > th dose independent rect. 14 16
113 11.84 wind 9.0 90 < th dose independent rect. 16 15
115 11.85 humidity 90.0 90 < th dose independent rect. 7 9
117 11.85 atmosphere 995.0 90 > th dose independent rect. 16 15
134 11.87 wind 9.0 10 < th dose independent rect. 17 15
137 11.87 atmosphere 995.0 10 > th dose independent rect. 17 15
138 11.87 radiation 40.0 10 < th dose independent rect. 17 15
145 11.88 humidity 90.0 10 < th dose independent rect. 8 9
175 11.91 radiation 40.0 90 < th dose dependent rect. 16 15
176 11.92 radiation 1.0 270 > th dose independent sin 3 NA
192 11.93 radiation 1.0 270 > th dose independent rect. 18 21
252 11.97 wind 1.0 10 > th dose independent rect. 8 9
255 11.97 temperature 10.0 1440 > th dose independent rect. 9 9
260 11.97 temperature 10.0 1440 > th dose independent rect. 18 15
263 11.97 humidity 50.0 1440 > th dose independent rect. 18 15
277 11.99 wind 1.0 90 > th dose independent rect. 7 9
282 11.99 wind 1.0 43200 < th dose dependent rect. 4 3
289 12.00 wind 5.0 270 < th dose independent rect. 16 10
292 12.00 atmosphere 1015.0 90 < th dose independent rect. 16 15
293 12.00 atmosphere 1015.0 10 < th dose independent rect. 17 15
300 12.00 temperature 10.0 90 > th dose dependent rect. 7 9
365 12.04 temperature 10.0 10 > th dose dependent rect. 8 9
369 12.05 wind 1.0 43200 < th dose independent rect. 4 3
394 12.06 wind 1.0 43200 > th dose independent rect. 4 3
407 12.06 wind 7.0 270 < th dose independent rect. 8 17
442 12.08 wind 7.0 270 < th dose independent rect. 7 19
466 12.09 temperature 30.0 30 < th dose dependent rect. 17 15
475 12.10 wind 1.0 10 > th dose independent rect. 17 15
480 12.11 temperature 30.0 90 < th dose independent rect. 7 9
515 12.12 temperature 10.0 270 > th dose dependent rect. 21 15
545 12.14 radiation 40.0 10 < th dose dependent rect. 17 15
550 12.15 radiation 1.0 10 > th dose independent rect. 8 9
614 12.17 precipitation 0.1 270 < th dose independent rect. 2 15
622 12.17 precipitation 0.1 270 < th dose dependent rect. 2 15
628 12.18 atmosphere 995.0 270 > th dose independent rect. 17 9
636 12.18 wind 7.0 270 < th dose independent rect. 6 21
638 12.18 wind 1.0 43200 < th dose dependent rect. 13 14
688 12.20 wind 9.0 270 < th dose dependent rect. 17 9
738 12.21 atmosphere 995.0 10 > th dose dependent rect. 8 9
742 12.21 radiation 40.0 90 < th dose dependent rect. 8 19
785 12.23 temperature 10.0 270 > th dose dependent rect. 18 8
789 12.23 wind 1.0 43200 < th dose dependent rect. 15 12
802 12.24 atmosphere 995.0 1440 > th dose independent rect. 18 15
818 12.25 temperature 10.0 270 > th dose independent rect. 17 9
820 12.25 radiation 20.0 270 < th dose independent rect. 17 9
824 12.25 wind 5.0 270 < th dose independent rect. 11 14
825 12.25 temperature 10.0 270 > th dose independent rect. 2 15
828 12.25 atmosphere 1015.0 270 < th dose independent rect. 2 15
873 12.27 radiation 40.0 270 < th dose dependent rect. 17 9
899 12.28 radiation 40.0 270 < th dose dependent rect. 11 15
955 12.30 wind 1.0 43200 < th dose dependent rect. 3 5
968 12.31 humidity 50.0 270 > th dose independent rect. 18 8
972 12.31 precipitation 0.1 270 < th dose independent rect. 17 9
974 12.31 wind 1.0 43200 < th dose independent rect. 16 11
993 12.31 precipitation 0.1 270 < th dose dependent rect. 17 9