BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0924900 Os01g0924900|AK067886
         (509 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0924900  GTP-binding signal recognition particle SRP54,...   548   e-156
Os03g0596900  GTP-binding signal recognition particle SRP54,...   119   4e-27

>Os01g0924900 GTP-binding signal recognition particle SRP54, G-domain containing
           protein
          Length = 509

 Score =  548 bits (1412), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 291/447 (65%), Positives = 291/447 (65%)

Query: 63  IERPSRERKTVERYSELAPRVTPAKKSPAILQGSGSKLKDIPNIQFKLSKRKADENLQSL 122
           IERPSRERKTVERYSELAPRVTPAKKSPAILQGSGSKLKDIPNIQFKLSKRKADENLQSL
Sbjct: 63  IERPSRERKTVERYSELAPRVTPAKKSPAILQGSGSKLKDIPNIQFKLSKRKADENLQSL 122

Query: 123 HVLMYGRKSNVHFLKRNISQFSGFVWTDNQEKQRTRIKEKLDKFNKEKLLDFCEILDIHV 182
           HVLMYGRKSNVHFLKRNISQFSGFVWTDNQEKQRTRIKEKLDKFNKEKLLDFCEILDIHV
Sbjct: 123 HVLMYGRKSNVHFLKRNISQFSGFVWTDNQEKQRTRIKEKLDKFNKEKLLDFCEILDIHV 182

Query: 183 SRAATKKEEVSAKLLEFLESPCITRDVVLTDDXXXXXXXXXXXXNGQATAEGASDGKKRR 242
           SRAATKKEEVSAKLLEFLESPCITRDVVLTDD            NGQATAEGASDGKKRR
Sbjct: 183 SRAATKKEEVSAKLLEFLESPCITRDVVLTDDKKGKKRGRRSKGNGQATAEGASDGKKRR 242

Query: 243 KSRKQSTXXXXXXXXXXXXGPADSEDASMGEEDDEDSEAKDNAGSXXXXXXXXXXXXXXX 302
           KSRKQST            GPADSEDASMGEEDDEDSEAKDNAGS               
Sbjct: 243 KSRKQSTEAAKENDDEDDEGPADSEDASMGEEDDEDSEAKDNAGSDEEPDEPPAKKKATD 302

Query: 303 XXXXXXXXXXXXXXXXXSTRPAKGVSKPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
                            STRPAKGVSKPSQ                              
Sbjct: 303 DKQTKKAKEKDATAKKASTRPAKGVSKPSQDTEEDDEPEVELESKKVVKKVSKSSKESDV 362

Query: 363 XXXXXXXXXXXXXXXXXXXXQNNNSGALNXXXXXXXXXXXXXXXXXXXXXXXEAGAAPTT 422
                               QNNNSGALN                       EAGAAPTT
Sbjct: 363 TVDKTTKKASKSKKDEGKDGQNNNSGALNNKARKKDAAKTTNKNKGKGKGSTEAGAAPTT 422

Query: 423 EELHAVVSDILKEVDFNTATLADILRQLGTHFKMDLMDRKSEVKHIIEEVINSMSXXXXX 482
           EELHAVVSDILKEVDFNTATLADILRQLGTHFKMDLMDRKSEVKHIIEEVINSMS     
Sbjct: 423 EELHAVVSDILKEVDFNTATLADILRQLGTHFKMDLMDRKSEVKHIIEEVINSMSDDEEG 482

Query: 483 XXXXXXXXXXXXXXXXXXXXXXDGDEK 509
                                 DGDEK
Sbjct: 483 EEDNAEDDKDKNAKEENSKEDADGDEK 509



>Os03g0596900 GTP-binding signal recognition particle SRP54, G-domain containing
           protein
          Length = 703

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 96/152 (63%), Gaps = 3/152 (1%)

Query: 63  IERPSRERKTVERYSELAPRVTPAKKSPAILQGSGSKLKDIPNIQFKLSKRKADENLQSL 122
            +RP RERKTVER  E+  +     ++  + +G G+ LKDIP++  ++S++K   +L+ L
Sbjct: 303 TDRPQRERKTVERLVEVIEK--EPNRNFVVEKGRGTPLKDIPSVAHRISRKKP-ADLKFL 359

Query: 123 HVLMYGRKSNVHFLKRNISQFSGFVWTDNQEKQRTRIKEKLDKFNKEKLLDFCEILDIHV 182
           H +++GRK      K +I QFSGFVW ++ EKQR + KEKLDK  K+ LL+ C IL I  
Sbjct: 360 HNVLFGRKGKTVDFKGHILQFSGFVWHESDEKQRAKAKEKLDKCVKDMLLELCWILAIPT 419

Query: 183 SRAATKKEEVSAKLLEFLESPCITRDVVLTDD 214
            +A  +KE++ AKLL+F+  P    D   +DD
Sbjct: 420 PKANIRKEDIVAKLLDFIAEPHAMADSGHSDD 451



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.126    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,289,702
Number of extensions: 298419
Number of successful extensions: 921
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 917
Number of HSP's successfully gapped: 3
Length of query: 509
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 404
Effective length of database: 11,553,331
Effective search space: 4667545724
Effective search space used: 4667545724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 158 (65.5 bits)