BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0924900 Os01g0924900|AK067886
(509 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63550.2 | chr5:25444805-25447934 FORWARD LENGTH=532 186 3e-47
AT3G48710.1 | chr3:18041024-18043995 FORWARD LENGTH=463 171 9e-43
AT5G55660.1 | chr5:22539375-22543142 FORWARD LENGTH=779 138 7e-33
AT4G26630.1 | chr4:13430873-13434877 REVERSE LENGTH=764 122 4e-28
>AT5G63550.2 | chr5:25444805-25447934 FORWARD LENGTH=532
Length = 531
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 139/219 (63%), Gaps = 16/219 (7%)
Query: 64 ERPSRERKTVERYSELAPRVTPAKKSPAILQGSGSKLKDIPNIQFKLSKRKADENLQSLH 123
ERP+RERK VER+S P P KS +I +G G+ L++IPN+ KLSKRKAD+NL LH
Sbjct: 99 ERPTRERKKVERFSLSTPMRAPPSKSVSIEKGRGTPLREIPNVAHKLSKRKADDNLMLLH 158
Query: 124 VLMYGRKSNVHFLKRNISQFSGFVWTDN-QEKQRTRIKEKLDKFNKEKLLDFCEILDIHV 182
+++G+K+ +KRNI QFSGF W++ +EKQR RIKEK+DK KEKL+ FC++LDI +
Sbjct: 159 TILFGKKAKAQMVKRNIGQFSGFAWSEKEEEKQRARIKEKIDKCVKEKLIVFCDVLDIPI 218
Query: 183 SRAATKKEEVSAKLLEFLESPCITRDVVLTDDXXXXXXXXXXXXNGQATAEGASDGKKRR 242
SR+ KKEE++ K+LEFLESP TRDV++ D G++ + K++R
Sbjct: 219 SRSNVKKEELAVKVLEFLESPKETRDVIIADQEKQAKKRKSTPKRGKSGESSDTPAKRKR 278
Query: 243 KSRKQSTXXXXXXXXXXXXGPADSEDASMGEEDDEDSEA 281
+++K+ P+D+E+ +E D DSE
Sbjct: 279 QTKKRDL-------------PSDTEEGK--DEGDADSEG 302
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 420 PTTEELHAVVSDILKEVDFNTATLADILRQLGTHFKMDLMDRKSEVKHIIEEVINSMS 477
PT +E+ VVS ILKEVDFNTATL+DIL++L HF ++L RK EVK +I E IN+M+
Sbjct: 428 PTRKEMLEVVSKILKEVDFNTATLSDILQKLSDHFGVELSHRKPEVKDVITEAINAMT 485
>AT3G48710.1 | chr3:18041024-18043995 FORWARD LENGTH=463
Length = 462
Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 121/186 (65%), Gaps = 2/186 (1%)
Query: 64 ERPSRERKTVERYSELAPRVTPAKKSPAILQGSGSKLKDIPNIQFKLSKRKADENLQSLH 123
ERP RERK RY P + K +I QG G++LK+IPN+ +KLSKRK D+NL LH
Sbjct: 59 ERPIRERKRTGRYVIDTPPRSSGNKPLSITQGRGTRLKEIPNVAYKLSKRKPDDNLFLLH 118
Query: 124 VLMYGRKSNVHFLKRNISQFSGFVWTDN-QEKQRTRIKEKLDKFNKEKLLDFCEILDIHV 182
++YG+K+ LK+NI QFSGFVW++ +EKQR + KEKLDK KEKL+DFC++LDI V
Sbjct: 119 TILYGKKAKAQMLKKNIGQFSGFVWSEQEEEKQRAKAKEKLDKCIKEKLIDFCDVLDIPV 178
Query: 183 SRAATKKEEVSAKLLEFLESPCITRDVVLTDDXXXXXXXXXXXXNGQATAEGAS-DGKKR 241
+++ KKEE++ ++LEFL P TRD++L D + E + K+R
Sbjct: 179 NKSTVKKEELAVRVLEFLVCPKATRDILLADSEKETKKRKKSTSKNVTSGESSHVPAKRR 238
Query: 242 RKSRKQ 247
R+++KQ
Sbjct: 239 RQAKKQ 244
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 420 PTTEELHAVVSDILKEVDFNTATLADILRQLGTHFKMDLMDRKSEVKHIIEEVINSMS 477
PT +ELH VV+ ILKEVDFNTATL+DILR+LG+HF +DLM RK+EVK II + IN MS
Sbjct: 385 PTRKELHVVVTKILKEVDFNTATLSDILRKLGSHFGIDLMHRKAEVKDIITDAINEMS 442
>AT5G55660.1 | chr5:22539375-22543142 FORWARD LENGTH=779
Length = 778
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 104/149 (69%), Gaps = 3/149 (2%)
Query: 64 ERPSRERKTVERYSELAPRVTPAKKSPAILQGSGSKLKDIPNIQFKLSKRKADENLQSLH 123
+RP RERK+VER + + + + + +G G+ LKDIPN+ +K+S++K+DE + LH
Sbjct: 330 DRPVRERKSVERLVAVVDK--DSSREFHVEKGKGTPLKDIPNVAYKVSRKKSDEVFKQLH 387
Query: 124 VLMYG-RKSNVHFLKRNISQFSGFVWTDNQEKQRTRIKEKLDKFNKEKLLDFCEILDIHV 182
+++G ++ LK +I +FSG+ W ++EK + ++KEK +K NKEKLL+FC++ DI V
Sbjct: 388 TILFGGKRVKATQLKAHILRFSGYKWQGDEEKAKLKVKEKFEKINKEKLLEFCDLFDISV 447
Query: 183 SRAATKKEEVSAKLLEFLESPCITRDVVL 211
++A TKKE++ KL+EFLE P T DV++
Sbjct: 448 AKATTKKEDIVTKLVEFLEKPHATTDVLV 476
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 420 PTTEELHAVVSDILKEVDFNTATLADILRQLGTHFKMDLMDRKSEVKHIIEEVINSM 476
P+ EEL + DILK VDFNTAT DIL++L F + L +KS +K +I++ + +
Sbjct: 686 PSDEELKTAIIDILKGVDFNTATFTDILKRLDAKFNISLASKKSSIKRMIQDELTKL 742
>AT4G26630.1 | chr4:13430873-13434877 REVERSE LENGTH=764
Length = 763
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 102/148 (68%), Gaps = 3/148 (2%)
Query: 64 ERPSRERKTVERYSELAPRVTPAKKSPAILQGSGSKLKDIPNIQFKLSKRKADENLQSLH 123
+RP RERK+VER L + + K + +G G+ LKDIPN+ K+ ++++DE L+ LH
Sbjct: 317 DRPVRERKSVERLVALIDK--DSSKEFRVEKGRGAYLKDIPNVANKVMRKRSDETLKLLH 374
Query: 124 VLMYG-RKSNVHFLKRNISQFSGFVWTDNQEKQRTRIKEKLDKFNKEKLLDFCEILDIHV 182
+++G R+ +K NI FSGFVW +++K + ++KEKL+K KEKL +FC++LDIH+
Sbjct: 375 PILFGGRRGKAAQIKTNILGFSGFVWHGDEKKAKEKVKEKLEKCTKEKLWEFCDVLDIHI 434
Query: 183 SRAATKKEEVSAKLLEFLESPCITRDVV 210
++A TKKE++ KL EFLE P +T DV
Sbjct: 435 TKATTKKEDIITKLFEFLEKPHVTGDVT 462
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 420 PTTEELHAVVSDILKEVDFNTATLADILRQLGTHFKMDLMDRKSEVKHIIEEVINSMS 477
P+ + L + +ILK VDF+TAT DIL++L F DL RKS +K II+E + ++
Sbjct: 677 PSDKVLKNAIVEILKRVDFSTATFTDILKELAKEFTEDLTPRKSSIKMIIQEELTKLA 734
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.126 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,106,196
Number of extensions: 206484
Number of successful extensions: 735
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 729
Number of HSP's successfully gapped: 8
Length of query: 509
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 406
Effective length of database: 8,282,721
Effective search space: 3362784726
Effective search space used: 3362784726
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 114 (48.5 bits)