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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0920500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.83 (0.0591) R2 : 0.565
β1 : 0.031 (0.214) R2dD : 2.62e-05 R2D : -0.0426
β2 : 2.36 (0.131) R2dC : 0.312 R2C : 0.313
β3 : 0.432 (0.314) R2dE : 0.00448 R2E : 0.00382
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.6 (1.26) R2dD*E : 0.18 R2D*E : 0.205
γ1 : 0.675 (0.121) R2dN8 : 0.0437 R2N8 : -0.0145
σ : 1.01
deviance : 470.55
__
_____
C
peak time of C : 1.81
E
wheather : wind
threshold : 6.908
memory length : 2879
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.1
open length of G : 3.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
470.6 1.02 3.83 0.0212 2.36 0.409 -0.105 -10.6 0.673 1.81 6.9 2880 17.1 3.92
536.75 1.08 4.01 0.209 2.39 2.58 0.0661 -- 0.658 1.97 7.024 2390 16.8 4.47
470.55 1.01 3.83 0.031 2.36 0.432 -- -10.6 0.675 1.81 6.908 2879 17.1 3.9
510.49 1.05 3.98 0.138 2.33 2.86 -- -- 0.587 2.1 7.1 3239 17.1 2.27
805.24 1.32 3.79 0.146 -- 0.432 -- -11.5 0.721 -- 7 2880 17.1 3.93
677.47 1.22 4.11 -0.506 2.54 -- -1 -- 0.197 1.9 -- -- -- --
681.25 1.22 4.11 -0.474 2.54 -- -- -- 0.204 1.84 -- -- -- --
823.94 1.34 3.89 0.822 -- 3.4 -- -- 0.996 -- 6.892 3686 17.3 2.35
509.27 1.05 4 -- 2.43 2.68 -- -- 0.651 1.83 7.175 3123 17.3 2.39
1071.11 1.53 4.08 -0.37 -- -- -- -- 0.262 -- -- -- -- --
687.18 1.23 4.1 -- 2.53 -- -- -- 0.257 1.84 -- -- -- --
837.23 1.35 3.99 -- -- 3.02 -- -- 0.657 -- 7.186 3699 17.3 2.38
1074.72 1.53 4.07 -- -- -- -- -- 0.303 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 487.27 wind 7 4320 > th dose independent rect. 17 4
2 490.25 wind 7 4320 > th dose dependent rect. 17 4
3 490.77 wind 7 4320 < th dose independent rect. 17 4
5 491.20 radiation 20 1440 < th dose independent rect. 11 2
9 494.77 radiation 20 1440 < th dose dependent rect. 11 1
11 495.74 radiation 20 1440 < th dose dependent rect. 11 22
34 499.83 radiation 20 1440 < th dose independent rect. 11 22
49 501.84 wind 7 4320 > th dose independent rect. 15 11
50 501.94 radiation 20 1440 < th dose dependent sin 23 NA
51 502.13 radiation 20 1440 < th dose independent rect. 11 5
54 502.41 radiation 20 1440 < th dose dependent rect. 7 11
58 502.50 humidity 70 1440 < th dose independent rect. 11 2
64 502.68 radiation 20 1440 < th dose dependent rect. 7 16
71 502.78 radiation 20 1440 < th dose dependent rect. 7 20
97 503.87 wind 7 4320 < th dose independent rect. 15 11
112 504.19 radiation 20 1440 < th dose independent rect. 11 13
116 504.22 radiation 20 1440 < th dose independent rect. 11 9
127 504.30 radiation 20 1440 < th dose independent rect. 11 16
133 504.36 radiation 20 1440 < th dose independent rect. 11 18
137 504.46 radiation 10 1440 > th dose independent rect. 17 21
138 504.46 radiation 20 1440 < th dose dependent rect. 17 23
161 504.77 radiation 20 1440 < th dose dependent rect. 1 17
164 504.85 radiation 20 1440 < th dose dependent rect. 21 21
167 504.87 radiation 20 1440 < th dose dependent rect. 19 23
179 505.02 radiation 20 1440 < th dose dependent rect. 1 23
209 505.17 radiation 20 1440 < th dose dependent no NA NA
242 505.86 humidity 70 1440 < th dose independent rect. 10 4
273 506.92 radiation 10 1440 > th dose independent rect. 11 22
282 507.14 radiation 30 1440 < th dose dependent rect. 11 5
346 508.37 radiation 1 1440 > th dose dependent rect. 11 22
350 508.45 radiation 10 1440 > th dose independent rect. 6 8
496 509.42 radiation 10 1440 > th dose independent sin 3 NA
522 509.79 radiation 30 1440 < th dose dependent rect. 11 13
525 509.81 radiation 30 1440 < th dose dependent rect. 11 9
531 509.91 radiation 30 1440 < th dose dependent rect. 11 16
593 510.88 humidity 70 1440 > th dose independent rect. 11 2
641 511.68 radiation 10 1440 > th dose independent rect. 6 12
654 511.69 radiation 1 1440 > th dose dependent rect. 11 5
658 511.72 radiation 10 1440 > th dose independent no NA NA
737 512.18 radiation 20 1440 < th dose independent sin 22 NA
741 512.32 radiation 1 1440 > th dose dependent rect. 11 2
751 512.42 radiation 20 1440 < th dose independent rect. 8 9
777 512.68 radiation 20 1440 < th dose independent rect. 8 16
778 512.69 humidity 70 1440 > th dose independent rect. 10 4
783 512.71 radiation 20 1440 < th dose independent rect. 8 12
807 512.78 radiation 20 1440 < th dose independent rect. 8 19
810 512.81 radiation 20 1440 < th dose independent rect. 8 21
839 513.00 humidity 70 1440 < th dose independent rect. 18 21
850 513.08 radiation 10 1440 > th dose independent rect. 8 23
885 513.55 radiation 20 1440 < th dose independent rect. 4 13
888 513.57 radiation 20 1440 < th dose independent rect. 1 16
897 513.64 radiation 20 1440 < th dose independent rect. 21 20
911 513.65 radiation 20 1440 < th dose independent rect. 18 23
947 513.82 radiation 20 1440 < th dose independent rect. 4 20
951 513.84 radiation 20 1440 < th dose independent rect. 1 23
958 513.85 radiation 20 1440 < th dose independent rect. 4 16
977 513.87 radiation 20 1440 < th dose independent rect. 2 18