BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0920500 Os01g0920500|AK107508
(148 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14590.1 | chr1:4998957-5000617 REVERSE LENGTH=387 124 2e-29
AT5G44820.1 | chr5:18095795-18097558 REVERSE LENGTH=368 123 4e-29
AT2G02061.1 | chr2:498025-499559 FORWARD LENGTH=409 123 4e-29
AT4G19970.1 | chr4:10818242-10825343 FORWARD LENGTH=716 120 2e-28
AT4G15970.1 | chr4:9049390-9051370 FORWARD LENGTH=359 99 8e-22
AT1G28700.1 | chr1:10083773-10084958 REVERSE LENGTH=339 80 3e-16
AT1G28695.1 | chr1:10081894-10083054 REVERSE LENGTH=330 80 4e-16
AT1G28710.1 | chr1:10086850-10088025 REVERSE LENGTH=341 80 5e-16
AT5G40900.1 | chr5:16391847-16393375 FORWARD LENGTH=323 55 1e-08
>AT1G14590.1 | chr1:4998957-5000617 REVERSE LENGTH=387
Length = 386
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Query: 3 MAAHMVTSSDFFVGGAYNPANFPNTGFLYVRSSRRAVGVMEAWRAARASYPGRHEQQVLN 62
M A + D ++G + + N PN GF +VRS+ R + + W A+R +PG H+Q VLN
Sbjct: 216 MYADFQIACDHYLGRSNDLHNRPNGGFNFVRSNNRTILFYKYWYASRLRFPGYHDQDVLN 275
Query: 63 EIKRE-LVERRGVRIQFLDTAHVAGFCSNTRDFATLYTMHANCCVGLGAKLHDLRNLLEE 121
+K E V R G++++FL+TA+ G C +RD + TMHANCC G+ +KLHDLR +L++
Sbjct: 276 FLKAEPFVFRIGLKMRFLNTAYFGGLCEPSRDLNLVRTMHANCCYGMESKLHDLRIMLQD 335
Query: 122 WRAYRRMPDEQRRQGPVRWKVPGIC 146
W+ + +P ++ WKVP C
Sbjct: 336 WKDFMSLPLHLKQSSGFSWKVPQNC 360
>AT5G44820.1 | chr5:18095795-18097558 REVERSE LENGTH=368
Length = 367
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 12 DFFVGGAYNPANFPNTGFLYVRSSRRAVGVMEAWRAARASYPGRHEQQVLNEIKRE-LVE 70
D F G Y+ N+ N GF YVRS+ R++ + W +R YP H+Q V N IK E +
Sbjct: 232 DRFFGNPYDSDNWVNGGFTYVRSNNRSIEFYKFWHKSRLDYPDLHDQDVFNRIKHEPFIS 291
Query: 71 RRGVRIQFLDTAHVAGFCSNTRDFATLYTMHANCCVGLGAKLHDLRNLLEEWRAYRRMPD 130
G++++F DT + GFC +RD + TMHANCC+GL KLHDL +L++WR Y + +
Sbjct: 292 EIGIQMRFFDTVYFGGFCQTSRDINLVCTMHANCCIGLDKKLHDLNLVLDDWRKYLSLSE 351
Query: 131 EQRRQGPVRWKVPGICIH 148
+ W VP C+
Sbjct: 352 PVQN---TTWSVPMKCLE 366
>AT2G02061.1 | chr2:498025-499559 FORWARD LENGTH=409
Length = 408
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 12 DFFVGGAYNPANFPNTGFLYVRSSRRAVGVMEAWRAARASYPGRHEQQVLNEIKRE-LVE 70
D ++G + N PN GF +VR++ R++G + W +R YP H+Q VLN IK + +
Sbjct: 249 DHYIGRPNDFRNRPNGGFTFVRANNRSIGFYKFWYDSRTKYPKNHDQDVLNFIKTDPFLW 308
Query: 71 RRGVRIQFLDTAHVAGFCSNTRDFATLYTMHANCCVGLGAKLHDLRNLLEEWRAYRRMPD 130
+ +RI+FL+T + GFC ++D + TMHANCC GL +KLHDLR +L++WR ++ +P
Sbjct: 309 KLRIRIRFLNTVYFGGFCEPSKDLNLVCTMHANCCFGLDSKLHDLRIMLQDWRDFKSLPL 368
Query: 131 EQRRQGPVRWKVPGIC 146
+ W VP C
Sbjct: 369 HSNQSSGFTWSVPQNC 384
>AT4G19970.1 | chr4:10818242-10825343 FORWARD LENGTH=716
Length = 715
Score = 120 bits (302), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/141 (40%), Positives = 83/141 (58%), Gaps = 10/141 (7%)
Query: 10 SSDFFVGGAYNPANFPNTGFLYVRSSRRAVGVMEAWRAARASYPGRHEQQVLNEIK-REL 68
+ D F G ++ N+ N GF YV+S+ R++ + W +R YP H+Q V N+IK + L
Sbjct: 580 ACDRFFGDPHDSDNWVNGGFTYVKSNHRSIEFYKFWYNSRLDYPKMHDQDVFNQIKHKAL 639
Query: 69 VERRGVRIQFLDTAHVAGFCSNTRDFATLYTMHANCCVGLGAKLHDLRNLLEEWRAYRRM 128
V G++++F DT + GFC +RD + TMHANCCVGL KLHDL +L++WR Y +
Sbjct: 640 VSEIGIQMRFFDTVYFGGFCQTSRDINLVCTMHANCCVGLAKKLHDLNLVLDDWRNYLSL 699
Query: 129 PDEQRRQGPVR---WKVPGIC 146
+ PV+ W VP C
Sbjct: 700 SE------PVKNTTWSVPMKC 714
Score = 104 bits (260), Expect = 1e-23, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 4/135 (2%)
Query: 10 SSDFFVGGAYNPANFPNTGFLYVRSSRRAVGVMEAWRAARASYPGRHEQQVLNEIKREL- 68
+ D + G + N N+GF YV+++ + + W + +PG+H+Q V N IK +L
Sbjct: 241 TCDDYNGRPSDKKNHVNSGFTYVKANNKTSKFYKYWIRSSRKFPGKHDQDVFNFIKNDLH 300
Query: 69 VERRGVRIQFLDTAHVAGFCSNTRDFATLYTMHANCCVGLGAKLHDLRNLLEEWRAYRRM 128
VE+ G++++F DT + GFC +RD + TMHANCC+GL K+++L+ LE+W+ Y +
Sbjct: 301 VEKLGIKMRFFDTVYFGGFCQPSRDINVVNTMHANCCIGLDNKVNNLKAALEDWKRYVSL 360
Query: 129 PDEQRRQGPVRWKVP 143
+W +P
Sbjct: 361 ---NTTVSETKWNIP 372
>AT4G15970.1 | chr4:9049390-9051370 FORWARD LENGTH=359
Length = 358
Score = 99.0 bits (245), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 1 MSMAAHMVTSSDFFVGGAYNPANFPNTGFLYVRSSRRAVGVMEAWRAARASYPGRHEQQV 60
+S + D + G + N N GF +V++++R + W +R YP RH+Q V
Sbjct: 155 LSKEVDFQIACDRYSGDDKDIHNAVNGGFTFVKANQRTIDFYNYWYMSRLRYPDRHDQDV 214
Query: 61 LNEIKRE-LVERRGVRIQFLDTAHVAGFCSNTRDFATLYTMHANCCVGLGAKLHDLRNLL 119
L++IK + G++++FLDT + GFC +RD + TMHANCCVGL K+ DLR ++
Sbjct: 215 LDQIKGGGYPAKIGLKMRFLDTKYFGGFCEPSRDLDKVCTMHANCCVGLENKIKDLRQVI 274
Query: 120 EEWRAYRRMPDEQRRQGPVRWKVPGICI 147
+W Y Q + W+ P C+
Sbjct: 275 VDWENYVSAAKTTDGQ-IMTWRDPENCM 301
>AT1G28700.1 | chr1:10083773-10084958 REVERSE LENGTH=339
Length = 338
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 26 NTGFLYVRSSRRAVGVMEAWRAARASYPGRHEQQVL-NEIKRELVERRGVRIQFLDTAHV 84
NTGF + RS+ + + + + W R G EQ VL N + + G+ + FL TA
Sbjct: 210 NTGFYHARSNNKTISLFQKWYDMRLKSLGMKEQDVLKNLLDSGFFNQLGLNVGFLSTAEF 269
Query: 85 AGFCSNTRDFATLYTMHANCCVGLGAKLHDLRNLLEEWRAYR 126
+GFC ++ D + T+HANCCV + AK+ DL L +W+ Y+
Sbjct: 270 SGFCQDSPDMGAVTTVHANCCVHIPAKISDLSLALRDWKRYK 311
>AT1G28695.1 | chr1:10081894-10083054 REVERSE LENGTH=330
Length = 329
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 1 MSMAAHMVTSSD-FFVGGAYNPANFPNTGFLYVRSSRRAVGVMEAWRAARASYPGRHEQQ 59
++M+ M S D VGG NTGF +VRS+ + + + + W R + G EQ
Sbjct: 180 LNMSLDMQISVDRINVGG-----QLINTGFYHVRSNNKTISLFQKWYDMRLNSTGMKEQD 234
Query: 60 VL-NEIKRELVERRGVRIQFLDTAHVAGFCSNTRDFATLYTMHANCCVGLGAKLHDLRNL 118
VL N + + G+ + FL T +GFC ++ + T+HANCC+ + AK+ DL +
Sbjct: 235 VLKNLLDSGFFNQLGLNVGFLSTTEFSGFCQDSPHMGVVTTVHANCCLHIPAKVFDLTRV 294
Query: 119 LEEWRAYR 126
L +W+ Y+
Sbjct: 295 LRDWKRYK 302
>AT1G28710.1 | chr1:10086850-10088025 REVERSE LENGTH=341
Length = 340
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 2 SMAAHMVTSSDFFVGGAYNPANFPNTGFLYVRSSRRAVGVMEAWRAARASYPGRHEQQVL 61
S+ + S VGG + NTGF +VRS+ + + + + W R G EQ VL
Sbjct: 193 SLDMQISVDSIGLVGG-----HLINTGFYHVRSNNKTISLFQKWYDMRLKSTGMKEQDVL 247
Query: 62 NEIKRE-LVERRGVRIQFLDTAHVAGFCSNTRDFATLYTMHANCCVGLGAKLHDLRNLLE 120
+ + G+ + FL+T +GFC ++ D + T+HANCC + AK+ DL +L
Sbjct: 248 KSLLDSGFFNQLGLNVGFLNTTEFSGFCQDSHDMGVVTTVHANCCRHILAKISDLTLVLR 307
Query: 121 EWRAYR 126
+W+ Y+
Sbjct: 308 DWKRYK 313
>AT5G40900.1 | chr5:16391847-16393375 FORWARD LENGTH=323
Length = 322
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 28 GFLYVRSSRRAVGVMEAWRAARASYPGRHEQQVLNEIKRE-LVERRGVRIQFLDTAHVAG 86
GF Y +S+ + + R YP Q + + +KRE +++ ++ FLD A+
Sbjct: 211 GFFYAKSNDITIDMFNILNVERVLYPATGNQSLCDIVKREDVIKALDKKVTFLDDANFGK 270
Query: 87 FCS-NTRDFATLYTMHANCCVGLGAKLHDLRNLLEE 121
FC N +D + + T+HA+CC +K+ L+ LL++
Sbjct: 271 FCQPNPQDQSKITTVHASCCHDTKSKVRYLKLLLQD 306
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,216,108
Number of extensions: 114342
Number of successful extensions: 366
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 10
Length of query: 148
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 59
Effective length of database: 8,666,545
Effective search space: 511326155
Effective search space used: 511326155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 107 (45.8 bits)