Os01g0918300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ubiquitin-like protein SMT3.
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Os01g0918300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ubiquitin-like protein SMT3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.16 | 0.343 | 16 | -0.451 | 0.657 | -0.46 | 0.228 | 2.11 | 0.212 | 23.4 | 0.04999 | 1405 | -- | -- |
| 54.92 | 0.345 | 15.9 | -0.163 | 0.513 | -0.891 | 0.163 | -- | 0.273 | 23.4 | 0.24 | 1370 | -- | -- |
| 53.34 | 0.34 | 16 | -0.457 | 0.658 | -0.498 | -- | 1.99 | 0.208 | 23.4 | 0.04188 | 1396 | -- | -- |
| 54.27 | 0.343 | 15.9 | -0.234 | 0.566 | -1.01 | -- | -- | 0.268 | 23.4 | 0.05093 | 1381 | -- | -- |
| 62.19 | 0.367 | 16 | -0.508 | -- | -1.52 | -- | 0.843 | 0.186 | -- | 0.1901 | 1264 | -- | -- |
| 66.16 | 0.381 | 15.9 | 0.0114 | 0.684 | -- | 0.117 | -- | 0.357 | 23.3 | -- | -- | -- | -- |
| 66.22 | 0.381 | 15.9 | 0.00666 | 0.683 | -- | -- | -- | 0.357 | 23.3 | -- | -- | -- | -- |
| 61.76 | 0.366 | 16 | -0.332 | -- | -1.58 | -- | -- | 0.195 | -- | 0.2987 | 1281 | -- | -- |
| 56.1 | 0.349 | 15.9 | -- | 0.57 | -0.886 | -- | -- | 0.282 | 23.4 | 0.2057 | 1376 | -- | -- |
| 95.47 | 0.457 | 15.9 | 0.0241 | -- | -- | -- | -- | 0.363 | -- | -- | -- | -- | -- |
| 66.22 | 0.381 | 15.9 | -- | 0.683 | -- | -- | -- | 0.356 | 23.3 | -- | -- | -- | -- |
| 64.19 | 0.373 | 16 | -- | -- | -1.48 | -- | -- | 0.185 | -- | 0.3361 | 1264 | -- | -- |
| 95.49 | 0.456 | 15.9 | -- | -- | -- | -- | -- | 0.361 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.15 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 25 | 48.99 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 28 | 49.15 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 37 | 49.65 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 89 | 51.46 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 96 | 51.57 | humidity | 90.0 | 270 | < th | dose independent | rect. | 24 | 14 |
| 97 | 51.57 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 108 | 51.71 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 21 | 9 |
| 111 | 51.73 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 13 |
| 130 | 52.05 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 131 | 52.06 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 136 | 52.10 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 141 | 52.14 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 144 | 52.18 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 163 | 52.41 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 170 | 52.47 | temperature | 15.0 | 10 | > th | dose independent | rect. | 9 | 21 |
| 174 | 52.49 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 12 |
| 193 | 52.68 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 200 | 52.73 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 205 | 52.75 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 9 | 20 |
| 214 | 52.83 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 240 | 53.04 | wind | 7.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 252 | 53.09 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 8 |
| 256 | 53.10 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 272 | 53.21 | wind | 7.0 | 10 | < th | dose independent | rect. | 9 | 21 |
| 285 | 53.31 | humidity | 90.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 288 | 53.32 | humidity | 90.0 | 270 | < th | dose independent | sin | 3 | NA |
| 293 | 53.34 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 297 | 53.38 | humidity | 80.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 335 | 53.52 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 336 | 53.52 | humidity | 70.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 343 | 53.55 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 22 |
| 349 | 53.57 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 351 | 53.58 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 353 | 53.59 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 23 | 7 |
| 358 | 53.59 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 369 | 53.67 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 399 | 53.81 | radiation | 10.0 | 30 | < th | dose dependent | sin | 10 | NA |
| 403 | 53.83 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 415 | 53.88 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 420 | 53.90 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 15 |
| 436 | 53.95 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 437 | 53.95 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 438 | 53.95 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 6 | 3 |
| 443 | 53.97 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 454 | 54.00 | wind | 9.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 468 | 54.03 | humidity | 50.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 471 | 54.04 | humidity | 80.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 473 | 54.04 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 477 | 54.04 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 500 | 54.09 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 502 | 54.10 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 508 | 54.11 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 5 | 9 |
| 515 | 54.12 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 527 | 54.17 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 540 | 54.20 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 6 |
| 558 | 54.23 | humidity | 90.0 | 270 | < th | dose independent | rect. | 20 | 23 |
| 564 | 54.23 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 565 | 54.24 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 581 | 54.24 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 583 | 54.25 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 596 | 54.26 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 610 | 54.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 22 |
| 630 | 54.30 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 639 | 54.31 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 640 | 54.31 | humidity | 90.0 | 270 | < th | dose independent | rect. | 22 | 23 |
| 642 | 54.32 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 652 | 54.34 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 655 | 54.34 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 685 | 54.37 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 692 | 54.37 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 718 | 54.40 | humidity | 90.0 | 43200 | < th | dose dependent | sin | 2 | NA |
| 723 | 54.41 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 733 | 54.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 21 |
| 740 | 54.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 748 | 54.44 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 7 |
| 761 | 54.46 | humidity | 70.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 789 | 54.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 791 | 54.49 | wind | 5.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 827 | 54.50 | temperature | 15.0 | 90 | > th | dose independent | rect. | 20 | 9 |
| 830 | 54.50 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 857 | 54.51 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 871 | 54.52 | humidity | 60.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 877 | 54.52 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 2 | NA |
| 885 | 54.53 | wind | 5.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 886 | 54.53 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 894 | 54.54 | humidity | 70.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 909 | 54.55 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 7 |
| 980 | 54.59 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 981 | 54.60 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 997 | 54.61 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 3 |