BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0918300 Os01g0918300|AK058869
(100 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26840.1 | chr4:13497466-13498458 FORWARD LENGTH=101 170 1e-43
AT5G55160.2 | chr5:22383747-22384772 REVERSE LENGTH=117 161 6e-41
AT5G55170.1 | chr5:22385468-22386071 REVERSE LENGTH=112 97 2e-21
AT5G55856.1 | chr5:22607927-22608640 FORWARD LENGTH=98 89 4e-19
AT5G48710.1 | chr5:19755065-19755572 REVERSE LENGTH=115 82 4e-17
AT2G32765.1 | chr2:13894968-13895399 FORWARD LENGTH=109 74 2e-14
AT5G48700.1 | chr5:19749494-19750013 REVERSE LENGTH=118 70 1e-13
AT5G55855.1 | chr5:22606254-22606491 FORWARD LENGTH=60 48 1e-06
AT1G68185.1 | chr1:25556542-25558173 FORWARD LENGTH=216 47 2e-06
>AT4G26840.1 | chr4:13497466-13498458 FORWARD LENGTH=101
Length = 100
Score = 170 bits (431), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/94 (89%), Positives = 86/94 (91%), Gaps = 3/94 (3%)
Query: 1 MSAAGEEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNA 60
MSA EEDKKP G GAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMN+
Sbjct: 1 MSANQEEDKKPGDG---GAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNS 57
Query: 61 IAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQT 94
IAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQT
Sbjct: 58 IAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQT 91
>AT5G55160.2 | chr5:22383747-22384772 REVERSE LENGTH=117
Length = 116
Score = 161 bits (408), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 85/109 (77%), Positives = 86/109 (78%), Gaps = 17/109 (15%)
Query: 1 MSAAGEEDKKPAGGEGGGAHINLKVKGQ-------------DGNEVFFRIKRSTQLKKLM 47
MSA EEDKKP GAHINLKVKGQ DGNEVFFRIKRSTQLKKLM
Sbjct: 1 MSATPEEDKKP----DQGAHINLKVKGQAFFVVGTWLVIDTDGNEVFFRIKRSTQLKKLM 56
Query: 48 NAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96
NAYCDRQSVD N+IAFLFDGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 57 NAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 105
>AT5G55170.1 | chr5:22385468-22386071 REVERSE LENGTH=112
Length = 111
Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 4 AGEEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAF 63
+ +D KP E AH+ LKVK QDG+EV F+ K+S LKKLM YCDR+ + ++A AF
Sbjct: 2 SNPQDDKPIDQEQE-AHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAF 60
Query: 64 LFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96
+F+G R+ G +TPDEL+MEDGD IDA +GG
Sbjct: 61 IFNGARIGGLETPDELDMEDGDVIDACRAMSGG 93
>AT5G55856.1 | chr5:22607927-22608640 FORWARD LENGTH=98
Length = 97
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Query: 8 DKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDG 67
DKKP +HI +KVK QD V+FRIKR +L+K+M+AY D+ V+M+ + FLFDG
Sbjct: 5 DKKPLIP---SSHITVKVKNQDDICVYFRIKRDVELRKMMHAYSDKVGVEMSTLRFLFDG 61
Query: 68 RRLRGEQTPDELEMEDGDEIDAMLHQTGG 96
R++ QTP+EL +ED DEI+A Q GG
Sbjct: 62 NRIKLNQTPNELGLEDEDEIEAFGEQLGG 90
>AT5G48710.1 | chr5:19755065-19755572 REVERSE LENGTH=115
Length = 114
Score = 82.4 bits (202), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 19 AHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPD 77
H+ LKVKGQD + F ++R+ +L K+M Y + ++ N FLFDG R+R TPD
Sbjct: 26 THVTLKVKGQDEEDFRVFWVRRNAKLLKMMELYTKMRGIEWNTFRFLFDGSRIREYHTPD 85
Query: 78 ELEMEDGDEIDAMLHQTGGCLPA 100
ELE +DGDEIDAML Q G P+
Sbjct: 86 ELERKDGDEIDAMLCQQSGFGPS 108
>AT2G32765.1 | chr2:13894968-13895399 FORWARD LENGTH=109
Length = 108
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 21 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELE 80
+ LKVK Q G E ++I LKKLM+AYC ++++D +++ F+++GR ++ QTP +L
Sbjct: 28 VTLKVKNQQGAEDLYKIGTHAHLKKLMSAYCTKRNLDYSSVRFVYNGREIKARQTPAQLH 87
Query: 81 MEDGDEIDAMLHQTGG 96
ME+ DEI M+ + GG
Sbjct: 88 MEEEDEI-CMVMELGG 102
>AT5G48700.1 | chr5:19749494-19750013 REVERSE LENGTH=118
Length = 117
Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 15 EGGGAHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFD-GRRLRG 72
E H+ L VKGQD V FR++R +L KLM Y + ++ N FL D G R+R
Sbjct: 25 ESESTHVTLNVKGQDEEGVKVFRVRRKARLLKLMEYYAKMRGIEWNTFRFLSDDGSRIRE 84
Query: 73 EQTPDELEMEDGDEIDAMLHQTGGCLPA 100
T D++E++DGD+IDA+L Q G P+
Sbjct: 85 YHTADDMELKDGDQIDALLPQESGFGPS 112
>AT5G55855.1 | chr5:22606254-22606491 FORWARD LENGTH=60
Length = 59
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 46 LMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDE---LEMEDGDEIDAMLHQTGG 96
+M AY D+ M+A F DG R++ QTP+E L++EDGDEIDA + Q G
Sbjct: 1 MMQAYSDKVGQQMSAFRFHCDGIRIKPNQTPNEELQLDLEDGDEIDAFVDQIAG 54
>AT1G68185.1 | chr1:25556542-25558173 FORWARD LENGTH=216
Length = 215
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 11 PAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRL 70
P+ A I + ++ +DG + R+ + ++++ Y D+ +D + F+FDG ++
Sbjct: 133 PSEPTNDRAKIVITIQDKDGQKTL-RVFADEKFERVIKLYTDKAKLDPQNLVFIFDGDKI 191
Query: 71 RGEQTPDELEMEDGDEIDAMLHQT 94
TP EL MED D I+ +T
Sbjct: 192 DPSTTPSELGMEDHDMIEVHTKKT 215
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,440,198
Number of extensions: 91849
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 9
Length of query: 100
Length of database: 11,106,569
Length adjustment: 70
Effective length of query: 30
Effective length of database: 9,187,449
Effective search space: 275623470
Effective search space used: 275623470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)