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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0915200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cystatin.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0471) R2 : 0.0893
β1 : 0.115 (0.173) R2dD : 0.000915 R2D : -0.00146
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.28 (0.744) R2dE : 0.1 R2E : -0.0129
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 10.6 (1.92) R2dD*E : 0.0928 R2D*E : -0.0204
γ1 : -0.154 (0.101) R2dN8 : 0.00635 R2N8 : 0.00657
σ : 0.878
deviance : 355.19
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.8
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.99
open length of G : 2.19

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
354.87 0.885 3.02 0.115 0.0653 4.34 -0.209 10.5 -0.151 19.1 24.79 10 8 2.24
373.29 0.9 3 0.198 0.0721 2.27 -1.16 -- -0.134 19.2 24.8 10 8.88 2.98
354.96 0.877 3.02 0.115 0.0646 4.34 -- 10.7 -0.151 19.9 24.8 10 7.99 2.09
375.35 0.902 3 0.218 0.0612 1.98 -- -- -0.122 21.6 24.8 11 8.87 3.02
355.19 0.878 3.02 0.115 -- 4.28 -- 10.6 -0.154 -- 24.8 10 7.99 2.19
385.81 0.921 3 0.0997 0.0217 -- 0.61 -- -0.173 7.65 -- -- -- --
386.81 0.921 3 0.116 0.036 -- -- -- -0.173 11.5 -- -- -- --
375.58 0.903 3 0.229 -- 1.91 -- -- -0.114 -- 24.75 11 8.87 3.03
377.1 0.904 3 -- 0.0595 2.07 -- -- -0.13 23.3 24.67 11 8.87 3
386.89 0.919 3 0.115 -- -- -- -- -0.174 -- -- -- -- --
387.16 0.92 3.01 -- 0.0348 -- -- -- -0.186 11.2 -- -- -- --
377.28 0.905 3 -- -- 1.97 -- -- -0.13 -- 24.68 11 8.87 3
387.24 0.919 3.01 -- -- -- -- -- -0.186 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 355.64 temperature 25.0 10 < th dose dependent rect. 8 2
9 358.83 temperature 20.0 90 < th dose independent rect. 3 1
13 360.11 temperature 20.0 10 < th dose dependent rect. 3 1
17 360.78 temperature 20.0 10 < th dose independent rect. 4 1
32 362.23 temperature 25.0 10 < th dose dependent rect. 2 9
37 362.72 temperature 25.0 90 < th dose dependent rect. 2 8
49 363.50 wind 7.0 90 > th dose independent rect. 7 2
53 363.63 wind 7.0 90 > th dose dependent rect. 7 2
63 363.89 wind 7.0 90 > th dose dependent rect. 1 8
65 363.90 wind 7.0 90 > th dose independent rect. 1 8
79 365.11 wind 5.0 90 > th dose independent rect. 7 6
81 365.14 temperature 25.0 270 < th dose dependent rect. 24 10
82 365.14 temperature 25.0 270 < th dose dependent rect. 24 17
88 365.47 temperature 20.0 10 < th dose dependent rect. 3 19
100 366.08 temperature 25.0 10 < th dose dependent rect. 2 15
107 366.19 temperature 25.0 90 < th dose dependent rect. 2 15
134 367.07 wind 3.0 90 > th dose dependent rect. 6 7
155 367.47 wind 3.0 10 > th dose dependent rect. 7 6
172 367.73 wind 3.0 90 > th dose dependent rect. 2 11
177 367.79 atmosphere 995.0 14400 > th dose independent rect. 12 2
232 368.35 atmosphere 995.0 14400 > th dose independent rect. 10 4
233 368.42 wind 7.0 10 > th dose independent rect. 12 1
257 368.78 temperature 25.0 270 < th dose dependent sin 4 NA
266 368.92 wind 5.0 30 < th dose independent rect. 4 11
268 368.93 humidity 80.0 270 < th dose independent rect. 6 1
298 369.28 temperature 25.0 10 < th dose dependent sin 2 NA
320 369.41 radiation 1.0 14400 < th dose dependent rect. 23 4
334 369.55 temperature 20.0 270 > th dose dependent rect. 24 9
346 369.64 humidity 80.0 270 < th dose dependent rect. 6 1
354 369.69 temperature 20.0 270 < th dose independent rect. 24 8
441 370.27 temperature 20.0 270 > th dose independent rect. 3 14
449 370.30 wind 5.0 30 < th dose dependent rect. 4 8
497 370.60 wind 5.0 10 < th dose independent rect. 4 8
498 370.60 temperature 25.0 10 > th dose dependent rect. 21 2
515 370.69 wind 5.0 30 > th dose dependent rect. 12 1
539 370.82 wind 3.0 1440 < th dose independent rect. 2 2
569 371.02 temperature 20.0 270 < th dose independent rect. 24 19
574 371.04 temperature 20.0 270 < th dose independent rect. 24 21
631 371.29 temperature 20.0 270 > th dose independent sin 3 NA
636 371.30 wind 7.0 10 < th dose dependent rect. 4 11
638 371.33 wind 3.0 4320 < th dose dependent rect. 2 1
647 371.39 wind 3.0 1440 > th dose independent rect. 2 2
668 371.53 wind 3.0 1440 < th dose independent rect. 1 4
676 371.57 precipitation 0.1 1440 > th dose independent rect. 17 1
689 371.69 temperature 20.0 270 < th dose independent rect. 6 1
694 371.71 wind 3.0 90 > th dose dependent rect. 21 16
696 371.72 temperature 20.0 720 > th dose dependent rect. 20 14
714 371.81 wind 3.0 720 > th dose independent rect. 1 5
744 371.95 temperature 20.0 270 < th dose independent sin 2 NA
755 371.99 temperature 25.0 90 < th dose dependent rect. 6 11
791 372.15 temperature 30.0 10 < th dose dependent rect. 14 21
794 372.17 temperature 20.0 720 > th dose dependent rect. 23 1
810 372.22 temperature 20.0 30 < th dose independent rect. 3 20
824 372.25 wind 3.0 720 > th dose independent rect. 24 9
830 372.27 wind 5.0 90 > th dose independent sin 6 NA
850 372.33 temperature 20.0 270 > th dose independent rect. 1 10
889 372.46 temperature 20.0 720 > th dose dependent rect. 22 3
897 372.48 wind 3.0 90 > th dose dependent sin 5 NA
898 372.48 radiation 1.0 14400 < th dose dependent rect. 23 1
913 372.54 atmosphere 995.0 14400 < th dose dependent rect. 14 1
924 372.55 wind 3.0 720 < th dose independent rect. 24 9
935 372.58 wind 5.0 90 < th dose independent sin 5 NA
1000 372.76 radiation 1.0 14400 < th dose dependent rect. 19 8