BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0915200 Os01g0915200|AK121863
         (186 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31980.1  | chr2:13609246-13609770 REVERSE LENGTH=148           78   3e-15
AT3G12490.2  | chr3:3960523-3961876 REVERSE LENGTH=235             60   5e-10

>AT2G31980.1 | chr2:13609246-13609770 REVERSE LENGTH=148
          Length = 147

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 17/100 (17%)

Query: 90  DREVQELGRFSVEEHNXXXX--XXDCGDVR---------LEFGRVVAAQRQVVSGLKYYL 138
           +RE+Q+LGR+ VE+ N        + G +          L+F RVV+AQ+QVV+GLKYYL
Sbjct: 48  NREIQQLGRYCVEQFNQQAQNEQGNIGSIAKTDTAISNPLQFSRVVSAQKQVVAGLKYYL 107

Query: 139 RVXXXXXXXXXXXXXXPRVFDAVVVVKPWLESRTLLTFAP 178
           R+               R+FD+VVV++PWL S+ LL F P
Sbjct: 108 RIEVTQPNGST------RMFDSVVVIQPWLHSKQLLGFTP 141



>AT3G12490.2 | chr3:3960523-3961876 REVERSE LENGTH=235
          Length = 234

 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 13/92 (14%)

Query: 92  EVQELGRFSVEEHNXXXXXXDCGDVRLEFGRVVAAQRQVVSGLKYYLRVXXXXXXXXXXX 151
           EV+ L RF+V+EHN         +  LEF RVV A+ QVV+G  ++L +           
Sbjct: 51  EVESLARFAVDEHNKKE------NALLEFARVVKAKEQVVAGTLHHLTLEILEAGQ---- 100

Query: 152 XXXPRVFDAVVVVKPWLESRTLLTFAPAADSP 183
               ++++A V VKPWL  + L  F PA+D+P
Sbjct: 101 ---KKLYEAKVWVKPWLNFKELQEFKPASDAP 129



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,174,978
Number of extensions: 46273
Number of successful extensions: 92
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 186
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 93
Effective length of database: 8,556,881
Effective search space: 795789933
Effective search space used: 795789933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)