Os01g0904700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Two-component response regulator ARR1.
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Os01g0904700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Two-component response regulator ARR1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.53 | 0.299 | 10.4 | -0.52 | 0.715 | 0.912 | 0.753 | 0.187 | 0.0238 | 1.17 | 23.19 | 5008 | -- | -- |
| 40.53 | 0.297 | 10.4 | -0.554 | 0.71 | 0.916 | 0.738 | -- | 0.0272 | 1.16 | 23.44 | 5029 | -- | -- |
| 42.73 | 0.304 | 10.4 | -0.571 | 0.692 | 0.918 | -- | 0.0889 | 0.0157 | 0.989 | 23.6 | 5288 | -- | -- |
| 42.71 | 0.304 | 10.4 | -0.586 | 0.681 | 0.929 | -- | -- | 0.036 | 1.02 | 24.15 | 5303 | -- | -- |
| 64.52 | 0.374 | 10.4 | -0.588 | -- | 1.11 | -- | -0.019 | -0.0201 | -- | 24 | 2485 | -- | -- |
| 68 | 0.387 | 10.4 | -0.202 | 0.775 | -- | 0.833 | -- | 0.136 | 0.927 | -- | -- | -- | -- |
| 70.91 | 0.394 | 10.4 | -0.233 | 0.774 | -- | -- | -- | 0.132 | 0.909 | -- | -- | -- | -- |
| 64.52 | 0.374 | 10.4 | -0.59 | -- | 1.11 | -- | -- | -0.0155 | -- | 24 | 2486 | -- | -- |
| 49.24 | 0.327 | 10.4 | -- | 0.688 | 0.714 | -- | -- | 0.208 | 1.21 | 27.84 | 5315 | -- | -- |
| 108.22 | 0.486 | 10.4 | -0.204 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 72.34 | 0.398 | 10.4 | -- | 0.77 | -- | -- | -- | 0.158 | 0.896 | -- | -- | -- | -- |
| 72.74 | 0.397 | 10.4 | -- | -- | 0.97 | -- | -- | 0.0858 | -- | 24.51 | 2492 | -- | -- |
| 109.32 | 0.488 | 10.4 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 40.12 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 4 | 40.32 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 67 | 40.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 13 |
| 139 | 41.13 | temperature | 25 | 4320 | > th | dose dependent | sin | 14 | NA |
| 158 | 41.17 | temperature | 20 | 4320 | > th | dose dependent | sin | 16 | NA |
| 287 | 41.47 | temperature | 10 | 4320 | > th | dose dependent | sin | 17 | NA |
| 454 | 41.72 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 461 | 41.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 23 |
| 474 | 41.73 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 589 | 41.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 20 |
| 617 | 41.91 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 618 | 41.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 19 |
| 684 | 41.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 717 | 41.99 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 20 |
| 718 | 42.00 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 745 | 42.01 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 22 |
| 859 | 42.08 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 883 | 42.10 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 901 | 42.10 | temperature | 10 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 933 | 42.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 8 |