BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0904700 Os01g0904700|AK062250
         (359 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0904700  Similar to Two-component response regulator ARR1    700   0.0  

>Os01g0904700 Similar to Two-component response regulator ARR1
          Length = 359

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/359 (95%), Positives = 343/359 (95%)

Query: 1   DLMNVPGLTRENVASHLQKYRLYLSRLQKQNEERILGAARQDFSHKGTSENLNLRSSFQE 60
           DLMNVPGLTRENVASHLQKYRLYLSRLQKQNEERILGAARQDFSHKGTSENLNLRSSFQE
Sbjct: 1   DLMNVPGLTRENVASHLQKYRLYLSRLQKQNEERILGAARQDFSHKGTSENLNLRSSFQE 60

Query: 61  QPSNIANGYPHASQNIQTQANMLDSQLEDTKSTVPLPVPDKKRTLASDAADSQNVTSASS 120
           QPSNIANGYPHASQNIQTQANMLDSQLEDTKSTVPLPVPDKKRTLASDAADSQNVTSASS
Sbjct: 61  QPSNIANGYPHASQNIQTQANMLDSQLEDTKSTVPLPVPDKKRTLASDAADSQNVTSASS 120

Query: 121 LGGVLSFKSMPVNQDRKPSETMILECQAWTGGIPSKQFMQYPKHNHERCDLLGDYSCLPK 180
           LGGVLSFKSMPVNQDRKPSETMILECQAWTGGIPSKQFMQYPKHNHERCDLLGDYSCLPK
Sbjct: 121 LGGVLSFKSMPVNQDRKPSETMILECQAWTGGIPSKQFMQYPKHNHERCDLLGDYSCLPK 180

Query: 181 PDLEHPVGPSNLYAPPPLISMSCGMEGDARDFSDVKPAIMDCIKSLSPALTCXXXXXXXX 240
           PDLEHPVGPSNLYAPPPLISMSCGMEGDARDFSDVKPAIMDCIKSLSPALTC        
Sbjct: 181 PDLEHPVGPSNLYAPPPLISMSCGMEGDARDFSDVKPAIMDCIKSLSPALTCTVDSVSVQ 240

Query: 241 XXXXXXXXIDGDLKSSGVDGLPSIKDCCLDQTNSQGSLRPSQEPSIIGSTELASLPEDLP 300
                   IDGDLKSSGVDGLPSIKDCCLDQTNSQGSLRPSQEPSIIGSTELASLPEDLP
Sbjct: 241 LSDSVVTSIDGDLKSSGVDGLPSIKDCCLDQTNSQGSLRPSQEPSIIGSTELASLPEDLP 300

Query: 301 SYPLHGVSLENIGLSSIDLLNYSDAMILSGLQSNWYDDLEFSSEMMDYPSIDECLFASS 359
           SYPLHGVSLENIGLSSIDLLNYSDAMILSGLQSNWYDDLEFSSEMMDYPSIDECLFASS
Sbjct: 301 SYPLHGVSLENIGLSSIDLLNYSDAMILSGLQSNWYDDLEFSSEMMDYPSIDECLFASS 359



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,008,002
Number of extensions: 507673
Number of successful extensions: 1302
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1301
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 257
Effective length of database: 11,709,973
Effective search space: 3009463061
Effective search space used: 3009463061
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)