BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0904700 Os01g0904700|AK062250
(359 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67710.1 | chr1:25376994-25378905 REVERSE LENGTH=522 62 5e-10
AT3G16857.2 | chr3:5756113-5759139 FORWARD LENGTH=691 56 2e-08
AT4G16110.1 | chr4:9112979-9115785 FORWARD LENGTH=665 55 5e-08
AT5G59570.1 | chr5:24004047-24004943 FORWARD LENGTH=299 55 6e-08
AT3G46640.3 | chr3:17183248-17184989 FORWARD LENGTH=325 55 6e-08
AT2G01760.1 | chr2:333041-334514 FORWARD LENGTH=383 54 1e-07
AT2G25180.1 | chr2:10724490-10726961 REVERSE LENGTH=597 53 2e-07
AT3G10760.1 | chr3:3369814-3370821 FORWARD LENGTH=336 52 5e-07
AT2G40970.1 | chr2:17097772-17098518 REVERSE LENGTH=249 51 7e-07
AT5G58080.1 | chr5:23501785-23504099 REVERSE LENGTH=619 51 9e-07
AT5G05090.1 | chr5:1503393-1504193 FORWARD LENGTH=267 50 1e-06
AT2G27070.1 | chr2:11555781-11560215 REVERSE LENGTH=576 50 2e-06
>AT1G67710.1 | chr1:25376994-25378905 REVERSE LENGTH=522
Length = 521
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 19/146 (13%)
Query: 1 DLMNVPGLTRENVASHLQKYRLYLSRLQKQNEERIL--GAARQDFSHKGTSENLNLRSSF 58
DLMNVP LTRENVASHLQKYRLYLSRL+K E + G D S K ++ + S +
Sbjct: 226 DLMNVPWLTRENVASHLQKYRLYLSRLEKGKELKCYSGGVKNADSSPK----DVEVNSGY 281
Query: 59 QEQPSNIANGYPHASQNIQTQANMLD------SQLEDTKSTVPLPVPDKKRTLASDAADS 112
Q P + + + IQ +A +D + L D + V +P KK + D
Sbjct: 282 Q-SPGRSSYVFSGGNSLIQ-KATEIDPKPLASASLSDLNTDVIMPPKTKKTRIGFDPP-- 337
Query: 113 QNVTSASSLGGVLSFKSMPVNQDRKP 138
S+S+ +L + +P + KP
Sbjct: 338 ---ISSSAFDSLLPWNDVPEVLESKP 360
>AT3G16857.2 | chr3:5756113-5759139 FORWARD LENGTH=691
Length = 690
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 26/27 (96%)
Query: 1 DLMNVPGLTRENVASHLQKYRLYLSRL 27
+LMNVPGLTRENVASHLQKYR+YL RL
Sbjct: 269 ELMNVPGLTRENVASHLQKYRIYLRRL 295
>AT4G16110.1 | chr4:9112979-9115785 FORWARD LENGTH=665
Length = 664
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/27 (85%), Positives = 26/27 (96%)
Query: 1 DLMNVPGLTRENVASHLQKYRLYLSRL 27
++MNVPGLTRENVASHLQKYR+YL RL
Sbjct: 248 EMMNVPGLTRENVASHLQKYRIYLRRL 274
>AT5G59570.1 | chr5:24004047-24004943 FORWARD LENGTH=299
Length = 298
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 25/27 (92%)
Query: 2 LMNVPGLTRENVASHLQKYRLYLSRLQ 28
LMNV GLTRENVASHLQKYRLYL R+Q
Sbjct: 174 LMNVEGLTRENVASHLQKYRLYLKRIQ 200
>AT3G46640.3 | chr3:17183248-17184989 FORWARD LENGTH=325
Length = 324
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 25/27 (92%)
Query: 2 LMNVPGLTRENVASHLQKYRLYLSRLQ 28
LMNV GLTRENVASHLQKYRLYL R+Q
Sbjct: 177 LMNVEGLTRENVASHLQKYRLYLKRMQ 203
>AT2G01760.1 | chr2:333041-334514 FORWARD LENGTH=383
Length = 382
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/27 (85%), Positives = 26/27 (96%)
Query: 1 DLMNVPGLTRENVASHLQKYRLYLSRL 27
+LMNVPGL+RENVASHLQK+RLYL RL
Sbjct: 232 ELMNVPGLSRENVASHLQKFRLYLKRL 258
>AT2G25180.1 | chr2:10724490-10726961 REVERSE LENGTH=597
Length = 596
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 1 DLMNVPGLTRENVASHLQKYRLYLSRLQK-QNEERILGAARQDFSHKGTSENLNLRSSFQ 59
DLMNV LTRENVASHLQK+RLYL R+ N++ I+ + F +N F
Sbjct: 227 DLMNVEKLTRENVASHLQKFRLYLKRISGVANQQAIMANSELHFMQ------MNGLDGFH 280
Query: 60 EQPSNIANGYPHA 72
+P + +G H
Sbjct: 281 HRPIPVGSGQYHG 293
>AT3G10760.1 | chr3:3369814-3370821 FORWARD LENGTH=336
Length = 335
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/27 (85%), Positives = 25/27 (92%)
Query: 2 LMNVPGLTRENVASHLQKYRLYLSRLQ 28
LM+V GLTRENVASHLQKYRLYL R+Q
Sbjct: 138 LMSVDGLTRENVASHLQKYRLYLKRMQ 164
>AT2G40970.1 | chr2:17097772-17098518 REVERSE LENGTH=249
Length = 248
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/27 (85%), Positives = 25/27 (92%)
Query: 2 LMNVPGLTRENVASHLQKYRLYLSRLQ 28
LM+V GLTRENVASHLQKYRLYL R+Q
Sbjct: 138 LMSVEGLTRENVASHLQKYRLYLRRMQ 164
>AT5G58080.1 | chr5:23501785-23504099 REVERSE LENGTH=619
Length = 618
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 29/34 (85%), Gaps = 3/34 (8%)
Query: 1 DLMNVPGLTRENVASHLQKYRLYLSRL---QKQN 31
DLM++ GLTRENVASHLQKYRLYL ++ Q+QN
Sbjct: 209 DLMSIEGLTRENVASHLQKYRLYLKKIDEGQQQN 242
>AT5G05090.1 | chr5:1503393-1504193 FORWARD LENGTH=267
Length = 266
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 25/27 (92%)
Query: 2 LMNVPGLTRENVASHLQKYRLYLSRLQ 28
LM+V GLTRENVASHLQKYRLYL R++
Sbjct: 114 LMSVDGLTRENVASHLQKYRLYLKRMK 140
>AT2G27070.1 | chr2:11555781-11560215 REVERSE LENGTH=576
Length = 575
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 2 LMNVPGLTRENVASHLQKYRLYLSRLQKQNEERILGAARQD 42
+MNVP LTRENVASHLQKYRL++ R+ Q +L +D
Sbjct: 258 IMNVPYLTRENVASHLQKYRLFVKRVVHQGRFSMLSDRGKD 298
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,738,944
Number of extensions: 329269
Number of successful extensions: 847
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 848
Number of HSP's successfully gapped: 12
Length of query: 359
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,364,969
Effective search space: 2166526971
Effective search space used: 2166526971
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)