Os01g0897700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to FH protein NFH1.
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Os01g0897700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to FH protein NFH1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 324.69 | 0.847 | 4.79 | -1.43 | 0.663 | 1.71 | 1.53 | 0.463 | -0.59 | 1.72 | 25.98 | 1275 | -- | -- |
| 324.81 | 0.839 | 4.8 | -1.52 | 0.66 | 1.75 | 1.62 | -- | -0.605 | 1.63 | 26.03 | 1274 | -- | -- |
| 333.43 | 0.85 | 4.77 | -1.26 | 0.645 | 1.71 | -- | 1.4 | -0.539 | 1.92 | 26 | 1234 | -- | -- |
| 333.87 | 0.851 | 4.81 | -1.6 | 0.637 | 1.84 | -- | -- | -0.63 | 2.15 | 25.97 | 1234 | -- | -- |
| 353.88 | 0.876 | 4.79 | -1.27 | -- | 2.03 | -- | 1.58 | -0.643 | -- | 24.9 | 1153 | -- | -- |
| 450.58 | 0.995 | 4.78 | -0.961 | 0.954 | -- | 1.97 | -- | -0.503 | 1.72 | -- | -- | -- | -- |
| 465.86 | 1.01 | 4.79 | -1.02 | 0.957 | -- | -- | -- | -0.515 | 1.84 | -- | -- | -- | -- |
| 354.54 | 0.877 | 4.83 | -1.65 | -- | 2.18 | -- | -- | -0.739 | -- | 24.92 | 1154 | -- | -- |
| 394.92 | 0.926 | 4.75 | -- | 0.666 | 1.4 | -- | -- | -0.34 | 2.18 | 27.49 | 1230 | -- | -- |
| 521.32 | 1.07 | 4.78 | -0.985 | -- | -- | -- | -- | -0.493 | -- | -- | -- | -- | -- |
| 493.5 | 1.04 | 4.76 | -- | 0.938 | -- | -- | -- | -0.401 | 1.81 | -- | -- | -- | -- |
| 420.75 | 0.955 | 4.77 | -- | -- | 1.79 | -- | -- | -0.469 | -- | 25.54 | 1156 | -- | -- |
| 546.9 | 1.09 | 4.75 | -- | -- | -- | -- | -- | -0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 329.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 6 | 329.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 33 | 329.87 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 51 | 330.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 21 |
| 99 | 330.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 108 | 330.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 118 | 330.58 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 129 | 330.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 144 | 330.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 151 | 330.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 169 | 330.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 196 | 331.24 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 204 | 331.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 211 | 331.45 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 231 | 331.72 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 239 | 331.80 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 262 | 332.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 269 | 332.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 274 | 332.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 278 | 332.15 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 287 | 332.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 317 | 332.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 319 | 332.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 321 | 332.72 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 356 | 332.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 358 | 332.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 361 | 332.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 367 | 332.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 368 | 332.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 419 | 332.93 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 443 | 332.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 473 | 333.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 474 | 333.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 479 | 333.17 | temperature | 30 | 1440 | < th | dose independent | sin | 23 | NA |
| 538 | 333.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 550 | 333.65 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 660 | 333.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 667 | 333.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 668 | 333.86 | temperature | 30 | 1440 | > th | dose independent | sin | 22 | NA |
| 723 | 334.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 819 | 334.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 942 | 335.05 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 944 | 335.07 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 951 | 335.10 | temperature | 30 | 1440 | < th | dose independent | sin | 9 | NA |